Pnob041524.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:60080328-60082925[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.19 31 7.1 2.9 1 19 183 201 183 206 0.91 2 15 7.7 1.3e+03 2.1 0.4 1 21 283 303 283 306 0.88 3 15 0.82 1.3e+02 5.2 0.4 1 14 312 325 312 332 0.80 4 15 3.1e-06 0.0005 22.2 3.9 3 23 342 362 340 362 0.96 5 15 0.78 1.3e+02 5.2 2.1 1 20 419 438 419 441 0.88 6 15 0.031 5.1 9.6 0.3 2 23 448 469 447 469 0.96 7 15 8.4e-05 0.014 17.7 2.1 1 23 517 539 517 539 0.98 8 15 0.0043 0.71 12.3 2.4 3 23 547 567 546 567 0.97 9 15 4.5e-05 0.0074 18.6 2.8 1 23 574 596 574 596 0.98 10 15 7.6e-05 0.012 17.8 1.5 1 23 602 625 602 625 0.98 11 15 0.65 1.1e+02 5.5 0.5 1 17 631 648 631 649 0.85 12 15 4.5e-06 0.00074 21.7 0.2 1 23 659 681 659 681 0.98 13 15 1.1e-05 0.0018 20.5 0.6 1 20 687 706 687 709 0.95 14 15 0.002 0.32 13.4 2.6 3 23 717 737 715 737 0.97 15 15 0.0058 0.95 11.9 1.0 1 19 743 761 743 763 0.94
Sequence Information
- Coding Sequence
- ATGAATTCTACAGAATTCAGTTATAAAATAATTGAACTTGTAAAAGAAAATGAAATAATTTGGTACGGGGACCGCATATATGGAAAAATTGATCATGAAGATACTTGGATGCAAATATCAAATAAACTTGGAAGATCTGTTGACGAATGTAAAAAACGTTGGAAAGGTTTACGTGATAGATTTAATAGGCTAACGAAACAAGGAGATATTAATTGGATTTATTACAATGAATTGTTATTTTTGAAAAATAATTGGGAAGAAATTCGTGACCAGAACAGTCTAGTTGAAAATGAAACAAAACAAGACCTTATTTTTAATAATAGTTTTTTATATGAATGTGATGAAAGAAGAAAAATATTAGATGATGAATTAAATGAAAATTCTGACGAAAATTATATATTAAATGATAATGGCGCGTTATGTAATGACAAACATTTTAAAGAATATTTAAAAGTTGAAGAATATATTGGCGAAGAAATGTATATGAAAGTAGAAGATTTCGGAATAAAATGTGGAGAAATATTTTTTCAACAAAAAAAATTTTTTTACGCTTGTTTATTCTGTAATAAACGTTTTGATTATAGTGAAGAATTTACTATTCATTGCTTGTATGAGCATTCGAAAGAAAGCAATGAGCTTGGGGAGTATTGTGATATAGAACAAGAACTAGATTCTCAGGTTATGAAGGAATCGAATCAATCCAACTACAAAGTAGACTATAATAAAAAGAAAAATACAAATACTCATAATTTATGTTATGAAACAAAAATAAATCAAACAGATATTAAACTAGAATTTGAACCATCTGATACTGATGTTGAAATTGAATCATTAGATAATTTAATTTATGAATGTGCATTATGCTCTTTTAATACAAATAAATTAAAAATGTTATTGAATCACGGGACAGAAAACCATCCTGGTGAAGCGATATTTAAATGTTTTAAATGTCCTCAAGTGTTTGAAAAATACGATATCTTATTAGATCATAAAATTGCTTGCCAGAAATATTCCAAATCTTGTTGTAATATATGTGATAAAAAATTCCGTAATAAAAAAGATTTAAGACAACATATGTTGGTGCATAATAATACAAGAATTCATAAACTGCCAGCAGAAAAATATATAGATACTAAAAATAGTGATTTAATAACATTAGAGTCATATTTTAAGTGCGGTTTATGTAACTTTGAAACTCTTGAAAAAGAATATTATATAGAACACTGTCGAAAAGAACATCCAGGTGAAACAGCTTTTAAATGTGATATGTGTCAAGTTGCATTTTCAAATTTTAATGTGTTAGATGATCATAGAAATTGCCATGATGGCAATAAAAGTTTAAAATGTCAATTTTGTCAAAAGGATTTTTTAACTTTAAGTGAGTTAGAAGTTCATGAATTAATACACAAAGATTTCCAAACGGTACAGAACATATCTGGAAGATTACATCGTGAAGTCTTAAAATGTGGTTGTTGCAATTTTGAAACTCAAGTAATCAAAATGTTTTTAAAACATTGTGAAGATCATATTGCTAATGGTGAAAAACCATTTAAATGTTGGGTTTGCGGTAAAATATTTAAGAAATATCGGTATTTAATTTACCATAGACGATTACATCGACGTTTAAATGATAGCGCATGTTCTTTCTGTGGTAAACAATTTCATACTTATAGAAGTTTGAGGGATCATGAACGTGGACATACTGGTCAAAGAACAGTTTATAAATGTCAATATTGTAATAAAGAATTTTGTTACCCAGAAACTTTAAGAGATCATGAAAATATTCATACTGGAAATCGTCCCTATAAATGTACGTTTTGTGGTCGTGAATTTTCTTTAAGAAGTACTTGGCAAACTCATGTTAGAGTTAAGCATTTAAATGATAAGAGATTCGAATGTAAAATTTGTGGTATAAAATGCCTTAAAAGAAGAGATGCTCTTGAACATGAAGCGTCACATTCTGGAAATAAATTATACATTTGCGATATATGTGGAAATACTTTTTCAAAAAATTCAGCTTTAATTTCTCATTTAAAGAGCCATGAAAATTTACGAAATTATAAATGTAAAATGTGTGAAAAAGGTTTTAATAATGCAACTAATTTAAGTCGTCATATGTGGGTTCACAGTGAAGAAAGAAATTGGGCATGTGAACTTTGCGGTAATAAATTTGTTTGCAAAAAAAATTTAAAACAACATATGAAAACACATAACAAAAATGTACTATTCATATGTGAAGGATGCGAAAAAGTATATACAACCAAAACTGCATTTGAATCACATAGTTGCTAA
- Protein Sequence
- MNSTEFSYKIIELVKENEIIWYGDRIYGKIDHEDTWMQISNKLGRSVDECKKRWKGLRDRFNRLTKQGDINWIYYNELLFLKNNWEEIRDQNSLVENETKQDLIFNNSFLYECDERRKILDDELNENSDENYILNDNGALCNDKHFKEYLKVEEYIGEEMYMKVEDFGIKCGEIFFQQKKFFYACLFCNKRFDYSEEFTIHCLYEHSKESNELGEYCDIEQELDSQVMKESNQSNYKVDYNKKKNTNTHNLCYETKINQTDIKLEFEPSDTDVEIESLDNLIYECALCSFNTNKLKMLLNHGTENHPGEAIFKCFKCPQVFEKYDILLDHKIACQKYSKSCCNICDKKFRNKKDLRQHMLVHNNTRIHKLPAEKYIDTKNSDLITLESYFKCGLCNFETLEKEYYIEHCRKEHPGETAFKCDMCQVAFSNFNVLDDHRNCHDGNKSLKCQFCQKDFLTLSELEVHELIHKDFQTVQNISGRLHREVLKCGCCNFETQVIKMFLKHCEDHIANGEKPFKCWVCGKIFKKYRYLIYHRRLHRRLNDSACSFCGKQFHTYRSLRDHERGHTGQRTVYKCQYCNKEFCYPETLRDHENIHTGNRPYKCTFCGREFSLRSTWQTHVRVKHLNDKRFECKICGIKCLKRRDALEHEASHSGNKLYICDICGNTFSKNSALISHLKSHENLRNYKCKMCEKGFNNATNLSRHMWVHSEERNWACELCGNKFVCKKNLKQHMKTHNKNVLFICEGCEKVYTTKTAFESHSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -