Pnob001503.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352772.1:29700606-29703303[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00066 0.11 14.9 3.6 2 23 129 151 128 151 0.95 2 14 0.37 60 6.3 2.4 1 23 246 269 246 269 0.93 3 14 0.091 15 8.2 2.4 2 23 322 344 321 344 0.95 4 14 0.0014 0.23 13.9 2.3 1 23 379 402 379 402 0.96 5 14 0.00088 0.14 14.5 2.9 1 23 426 448 426 448 0.98 6 14 1.1e-05 0.0018 20.5 2.1 1 23 457 480 457 480 0.94 7 14 1.1e-06 0.00018 23.7 1.7 1 21 486 506 486 507 0.95 8 14 0.21 34 7.0 0.1 1 23 524 547 524 547 0.92 9 14 7.1 1.2e+03 2.2 2.4 1 21 553 573 553 575 0.85 10 14 0.00071 0.12 14.8 0.7 1 23 582 604 582 604 0.95 11 14 0.52 85 5.8 3.4 1 21 610 630 610 632 0.86 12 14 9.7e-08 1.6e-05 27.0 0.7 1 23 638 660 638 660 0.99 13 14 0.00011 0.018 17.4 2.6 1 23 666 689 666 689 0.98 14 14 0.002 0.33 13.4 1.1 1 23 694 717 694 717 0.95
Sequence Information
- Coding Sequence
- ATGACAAACAATTTCTTTAAACCCTCAATACCAGAAGATTTTTCTTCTAATAATATTGAAAATGTTTGCCGTGTTTGTTTACAAACTGAAATTACGTTATCTTCTATTTTCGAAGAGGAAATTGATGAAATGATTTCAGAATTTCTACAAGAAAAAGTTGATCCTCTAGACAATTTTCCGCACCAGATTTGCAAAAAATGTATAAAAGAAGTTAAAATAGCATATAGGTTTAAAAAACAAATGGAATATTCACATGAAGTGATAAAAAAAATATTAGATGGAAAAAGATTACCCAGATCGTTAAATAGAAAATCATATCATGAAAATAATATATCTCGAATTAAGATTTGTGCCAGTGATCCACTTAGAGACGCAAAAAGTTTAACATGTCATATATGCAAAAGATCTTTAAAAAGAAGAGATTTTTTAAAGAAACATTTGGAAAAAGTACACAAATTTTATAAATTTGAAGAATTTTATAAAGAATTGTGTTCGAATTCAAAAAATAAAAGAATTGCAAACAATAAGACATCTTCTGATGACAATTTTATAGAAGAAATGCCTTTTCCAATTCTTCCTCAAGTGGTAATGACTGGCATTGAAAACAACTTACGTGATACTGAAAATGAAAATTTTTTGGAAAATATATTCAAAACTGATTATGAAAACATTGCAGAAACTCCTAATTTTACTAAATTAAATTCATTTACAACAGACGATCAACAACGGACTACATATGACTGTCATATATGTGATGAACGTTTAAATACATTAAATTTGTTAAAGTGTCACCTAGAAAAAATACATCAGCTACATGATATTGATGATTTGGATGTTAAACCACAAATGATACCTTTAAAAAATGACATAGCAATCGATTCAAATGAAAAACCGAAGCCAATATCAATATTTGAAGATCTTATAGAATGTGATGAAAATAATGATTATAATGAAGAGTCTTCAAAATGTAATATTTGTAAAGAAGTCTTGCTAAAAAAATCTGATTTAAAAAAACATTACCATTCAGTTCATAATACGTCTGATATTGATCTTTCTAATGACCAGAAAATTATGTCAAAAGGAGATAATGTTAATCCAGTTTCGAATAAAACCAGATTGAAAACCATTAATGTTTACATATGTCATATTTGCGAAAAAGAATTTTCTGGCCGTACAACAACCAGAAGACATTTAAAAAATATTCATAAATTTGAAAATTTTAATGATAATATATGGTTATCAAAAGTTTATCAAAAGACAATTGAAGCAAAAATTTATGAATGTGAAACATGTCATAAATTTTTCGGTAAAACTCAAGATTTAATGCGACATCAATTATTACATTCAGGGCATCCTAGAGCTAAACCATATGCTTGTACGATGTGTACAAAATCATTTTCTAGATCAAATCACCTTAAAACACATGTTAATGGTGTACATGCTGATTTAAGACCTTTTAAATGTTCAACATGTGAAAAATCTTTCAGACGCAGTGAACATCTCAAGCGACATATATTGATTTGCACAACAGAAAGAAAAAGATCAAGAAAAGTACCAACAGAACATGTATTTCCATGTGAAACATGTCTTAGAAAATTCCCAACTGAAAAGGCTGTTGAGGATCATGTATCGCTTGAACATAATGAAACAAGAGAATTTACATGTAAATATTGTTCAGAAAAAATAATTGGTTCAACAGCATATAGACAACATTGTAAAGAACACTATAAGACTTCAAAACAGTTTCTATGTTCTGAATGTGGGGGTAGCTTTAGAAAATTACAAGATTTTAAAATTCATTTAAAGAGACATACAGGTGAAAAACCATTTAAATGTCGTTATTGTGATAAAGCATTTTTAAGACCAGCAGACCAACATGCACATGAAAGATGTCATACCGGAGAAAGAAATTTCCAGTGCACAAATTGCCCAAAAGCATTTTCAACAGCTTATAAATTAAGAGTCCATATGCGAATTCATACGGGAGAGCGACCCTATAAATGTCAATATTGTCCAAGAGCCTTTGCAAAAACAGGAGATCTAAAAATACATCATAAACGCCGGCATACCAGCGAACGCTTCTTTTGCGATCTCTGTGATTTAGGTTTTGTTCAAATGTTTAATTTAAGGCAACATAAACGGCAACTTCACGGTATTGATGAACCTCCTTTAAGAAGTACCTTTGTAAATAAAGTTCAGGTGGAGCCAGAAAATCAATCTTCAATTACAAATACGCCAGATGAAAATAAAACTTCAGATGTTGGAACAGCTGATCTGTTAAATAATGAAAATAATGGTATCAAAAACGAAATTGTATGTGAGGTAAAACGAAATAATAAATTAATAAATTAA
- Protein Sequence
- MTNNFFKPSIPEDFSSNNIENVCRVCLQTEITLSSIFEEEIDEMISEFLQEKVDPLDNFPHQICKKCIKEVKIAYRFKKQMEYSHEVIKKILDGKRLPRSLNRKSYHENNISRIKICASDPLRDAKSLTCHICKRSLKRRDFLKKHLEKVHKFYKFEEFYKELCSNSKNKRIANNKTSSDDNFIEEMPFPILPQVVMTGIENNLRDTENENFLENIFKTDYENIAETPNFTKLNSFTTDDQQRTTYDCHICDERLNTLNLLKCHLEKIHQLHDIDDLDVKPQMIPLKNDIAIDSNEKPKPISIFEDLIECDENNDYNEESSKCNICKEVLLKKSDLKKHYHSVHNTSDIDLSNDQKIMSKGDNVNPVSNKTRLKTINVYICHICEKEFSGRTTTRRHLKNIHKFENFNDNIWLSKVYQKTIEAKIYECETCHKFFGKTQDLMRHQLLHSGHPRAKPYACTMCTKSFSRSNHLKTHVNGVHADLRPFKCSTCEKSFRRSEHLKRHILICTTERKRSRKVPTEHVFPCETCLRKFPTEKAVEDHVSLEHNETREFTCKYCSEKIIGSTAYRQHCKEHYKTSKQFLCSECGGSFRKLQDFKIHLKRHTGEKPFKCRYCDKAFLRPADQHAHERCHTGERNFQCTNCPKAFSTAYKLRVHMRIHTGERPYKCQYCPRAFAKTGDLKIHHKRRHTSERFFCDLCDLGFVQMFNLRQHKRQLHGIDEPPLRSTFVNKVQVEPENQSSITNTPDENKTSDVGTADLLNNENNGIKNEIVCEVKRNNKLIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -