Pnob040586.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:29004755-29007574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.014 2.2 10.7 0.1 1 20 336 355 336 357 0.93 2 12 0.12 20 7.7 1.9 1 23 365 387 365 387 0.98 3 12 0.00086 0.14 14.5 3.2 2 23 392 413 391 413 0.95 4 12 1.1e-06 0.00018 23.6 1.7 1 23 419 441 419 441 0.99 5 12 0.00027 0.044 16.1 0.5 3 23 450 470 448 470 0.98 6 12 1.4e-05 0.0022 20.2 0.6 1 23 476 498 476 498 0.96 7 12 0.0001 0.017 17.4 0.6 1 23 504 526 504 526 0.95 8 12 3.9e-06 0.00064 21.9 0.7 1 23 532 555 532 555 0.97 9 12 2.2e-05 0.0035 19.6 2.0 1 23 561 584 561 584 0.95 10 12 0.0013 0.21 14.0 4.3 1 23 590 612 590 612 0.99 11 12 1.7e-05 0.0028 19.9 0.5 1 23 618 640 618 640 0.97 12 12 0.001 0.17 14.3 0.4 1 23 646 670 646 670 0.92
Sequence Information
- Coding Sequence
- ATGGAGATATCAGAAGCACTAAAGGAAAACGAGAAATTTATTGGGACACAAATCGCCCCAATAAAATGTTTTTTATGTGATAAAAATTTTATGGTTGGAGATGAATCTTATTTAATGTTTGAAAAACGATTGACTGAAAATGATGAAGAAGATGTTTCAATGGCAACCGTTTTAAGTTCAGCAATAGGAAAAGAAATAAATGAATCAACAGCACATTCAAAAGTTTTATGCCATAGTTGTAATGAATTTATTCTTGAATTTGAACTAATTGAACAACGCTATATACAATTAAAGTACAAATTAATAAAGGATTATAATAAAGTAGTTAGAAAAAATGAATCAAAAGAAATTACATTAGAAATATCACAAGATCAAATTGATAATATTGAAGAAACGAATGAAGATATTATAATTGAACAAAATGATGATACACAATCATCAAGAGTTATACTTACTTCATTGGATAAACAAGATATATTTGAATATTTATTAGATAAAAGTTTTATAACAGTTAGTTCAAAAACAGATAACAAAGATGATTTAAATAATTTAAATAATAATTCCAAAGATGTCTTCATAAAAATGGAAAATACGTTAGGTGAAGAAATTGAAAGTAAATATACTGAAGATCAATTAATTACAGTAGAAAATAAAAGCGATATTGAAGTTTCTCCCGAAGATGTGCATTTTGACGAAATTCATGAGCAAACTCAATTTAGTACAGGGGAAAATACTTTAGATCACGAAGTAGATACAACTTCCTTACAATTTATTGATGACGACAACACATCTTTAAAATCAGCTGATTTTTCTGCACATTTTGAATTAGAATTACAACCCAAAACAAAGTTAATTACAACTGAAGATACGCGACCATCTTTTCTATTTGATGGAGAAAAATTTATGTGTTTACTATGTTCAGATTCATATACTGAAAATTCACTTGAATCATTTGATTCCAAAACAATTACAGAACATTTAAAAGAAAAACATGATGTTGTTTTATATGCTTGCTATTTTTGTGGTGGTGGTTTTTCTAAAAAATCTGATTTAATTGAACATACGGAAAAAACAAAATGTCAGATTAATGATTATCAGTGTGAAATTTGCTTTCAATTATTTGATGATTTACGAAGGTATAAAAGCCATAAAAAAATTCATAAAAATTCATTGGAATGTCATATTTGCAACGAACATTTTACAACAAAAAGCACACTTGATGAACACTTTAGTGTTCACAGTGGAAAACGTCCTTTTAAATGTAATATTTGCTCAAAAGATTTTGCTTCCAAATACACTTTAACGTCACATATGAAAATTCATACTGATCGTCAAAGACCATTCGGATGTGATAAATGTCCCAAATCATTTTTAACCGCAGCAAACTTACAACAGCATAGTAGAACCCATTCAAATATAAAAGAATTTATTTGTGATGTATGTCAAAAAAGTTTTGCTACTCAACATAATTTAGTTATTCATAAAATTGTTCATACCGGTCATAAACCATTTTTATGTCGAACTTGTGGAAAATCATTTGCTAGAAGAGCTGAAATTACAGATCATGAAAGAACTCATACAGGAGAAAAGCCCTTTGAATGTGATATCTGTGGTATAAGATTTGCACAAAGATCAAATTTATCAACTCATAAGAAATCGACCCATTTTAATGAGAAAAAACATAAGTGTGATACATGTGGAAAAAGTTTTAAGAGGAAAAGACTATTGGATTACCATATTCAAGCAGCTCATACAGGAGAAAGGCCGTATAAATGTGAAGCATGCCATTCAACCTTTGTTTATCCAGAACATTATAAAAAGCATTTACGAATTCATTCTGGAATTAAACCATATCCATGTGAAGTTTGTGGAAAAACTTTTAATTCAAGAGATAATCGAAATGCACATCGTTTTATCCATAGTGACAAAAAACCATATGAATGCTTAACTTGTGGTCAAGGTTTCATGAGGAAGCCTTTGCTTTATAATCATATGCAGTCATCAAATCATTTCAATGATACAATAATAGTTAATCAGCCTCGTATCAAATCAAATACAACACAAGAATCTTCTGGATCAGATAATGATATTCATATAAATAATGAAAATAGCAATTATGAAATGGTTATGGATACAAAAGTAATATTAATTGAGGAAACGGATGAAATGGATGAAATAGTTTTAGAAGAGGAACATTTAATTGATTCGATTGATGGACAGGATTCAATCAATAATACTTTAACTGAAGAGAATAATGATAATGAAATAAGTGAAGAAATTTCGGGAAATAGAAAAAAGTATGAGGTGCATGCGATAAAAAAATATTTAAAACAAATTGTTTGA
- Protein Sequence
- MEISEALKENEKFIGTQIAPIKCFLCDKNFMVGDESYLMFEKRLTENDEEDVSMATVLSSAIGKEINESTAHSKVLCHSCNEFILEFELIEQRYIQLKYKLIKDYNKVVRKNESKEITLEISQDQIDNIEETNEDIIIEQNDDTQSSRVILTSLDKQDIFEYLLDKSFITVSSKTDNKDDLNNLNNNSKDVFIKMENTLGEEIESKYTEDQLITVENKSDIEVSPEDVHFDEIHEQTQFSTGENTLDHEVDTTSLQFIDDDNTSLKSADFSAHFELELQPKTKLITTEDTRPSFLFDGEKFMCLLCSDSYTENSLESFDSKTITEHLKEKHDVVLYACYFCGGGFSKKSDLIEHTEKTKCQINDYQCEICFQLFDDLRRYKSHKKIHKNSLECHICNEHFTTKSTLDEHFSVHSGKRPFKCNICSKDFASKYTLTSHMKIHTDRQRPFGCDKCPKSFLTAANLQQHSRTHSNIKEFICDVCQKSFATQHNLVIHKIVHTGHKPFLCRTCGKSFARRAEITDHERTHTGEKPFECDICGIRFAQRSNLSTHKKSTHFNEKKHKCDTCGKSFKRKRLLDYHIQAAHTGERPYKCEACHSTFVYPEHYKKHLRIHSGIKPYPCEVCGKTFNSRDNRNAHRFIHSDKKPYECLTCGQGFMRKPLLYNHMQSSNHFNDTIIVNQPRIKSNTTQESSGSDNDIHINNENSNYEMVMDTKVILIEETDEMDEIVLEEEHLIDSIDGQDSINNTLTEENNDNEISEEISGNRKKYEVHAIKKYLKQIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -