Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: -
Assembly: GCA_947095535.1
Location: OX352772.1:333878576-333880413[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.1e-05 0.0051 19.1 0.6 1 21 278 298 278 299 0.95

2 9 0.56 92 5.7 0.2 1 23 327 349 327 349 0.96

3 9 0.0003 0.049 16.0 0.1 2 23 359 380 358 380 0.97

4 9 2e-06 0.00033 22.8 0.8 1 23 386 408 386 408 0.99

5 9 2.9e-05 0.0048 19.2 2.7 1 23 414 437 414 437 0.97

6 9 6.4e-07 0.0001 24.4 1.0 2 23 446 467 445 467 0.97

7 9 1.2e-05 0.002 20.4 0.3 2 23 474 495 473 495 0.97

8 9 1.2e-06 0.0002 23.5 1.8 1 23 502 524 502 524 0.97

9 9 8.9e-07 0.00015 23.9 0.1 1 23 530 552 530 552 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.1e-05	0.0051	19.1	0.6	1	21	278	298	278	299	0.95
2	9	0.56	92	5.7	0.2	1	23	327	349	327	349	0.96
3	9	0.0003	0.049	16.0	0.1	2	23	359	380	358	380	0.97
4	9	2e-06	0.00033	22.8	0.8	1	23	386	408	386	408	0.99
5	9	2.9e-05	0.0048	19.2	2.7	1	23	414	437	414	437	0.97
6	9	6.4e-07	0.0001	24.4	1.0	2	23	446	467	445	467	0.97
7	9	1.2e-05	0.002	20.4	0.3	2	23	474	495	473	495	0.97
8	9	1.2e-06	0.0002	23.5	1.8	1	23	502	524	502	524	0.97
9	9	8.9e-07	0.00015	23.9	0.1	1	23	530	552	530	552	0.98

Sequence Information

Coding Sequence: ATGGGAAGAAGACGTTCAAAGAATGGTATGATTGATATTGGGGAATTTCAAAGGCTTAATAGTGGACGTTGTATGTTTAAATGTAAAACATGTAAGCAACAGATGGAAATCAAGGATCTTAATTTATTTATAAATCACGTTAAAGAAAATCATCCTATTAAAAATTCTAACTCGGAATCTAATGTTAAAGCTGACAAAGTAGAATTTGATAAACAAAATCTAAGATTGTTGGATGAGAATAAACTGTCCAAAATAAATAAACGAACTGAAGTATATGATTTAGAAATTGCTCCAGAAAATGAAATAAAACCAATACCAAAATTAAAAATAAACATAAAACGATGTGAAGTTATAAAAGTAACAAATCAAAATTTTGAAACAATTAATGAATTACAAGCCGATACAAAATTATTGGAAAGCTCAAAAAATATAACTAAAGTTAAAATTAATCAAAATAATATAGATTTGTTTAGTAAAATTAATAATATAGATACACAAACTAGATATCAAGATCATAATGTAAATTCAGATTCTGATGATTATATAGATAGTGGGGATTTTAAAAAATTAGAAATAAATTTTAGTATTTTACCAAAGGAAAATTCGGATATATCAAAATCAACAATTGAAAATTCTTATAATCAAAATTCTGAAAGTAATTGTATTGTTGATTCTAATAATTTTAATGATATAAACTGTAACTCCAATGTTAACGAACCAAAAGAAACATTTTTGTCAAAATCACGATACTTTACAAGTGAAAGTGATGATTTTAAAACAAAAATTGTGGATTCAGATCATGATTATGACAATTTTGAAAAAGATATTTGTTTTACTTGTGAAAAATGTGGTATAAAATATAAAAAACAGTCAACCCTTATTAAACATTTAAAAATTTGTCAAAGAAGTAAAAAAAAACATAAGATAAAAAAAAAACAAAAACTAATTAAGGCAAAAGAGAAAAATGAAAATGGAATGTACGAATGCTCAAATTGTGAATTAGAAATGTCCACAGTTAATGAATTAAAACTACATGAAAAATTACATATTTTAGAAAACATTAAACAAAAAATACAATGTGAAATATGTGGAAAAAGTTTAAACTCAATAACTGGTTTGAATATACATTTAATGAGACACACTGGTTTATCTCCTTATAAGTGTTTAATATGTGATCGAGGATTTTATAATAAATATACTTTAGCAGCACATCAACAAACCCACAATTCAGAAAAGGAATATAAATGTGAACATTGTGATAAAGAATATGGTAGATATGTTGATTTAAAACGGCATGTACGCTATACTCACTTAAAAGAAAAACCAAATCCAGTTATGTGTGATCTGTGTGGAAAATCATTTTCATTTGCTTTCAATTTAAAATATCATATGAGAAGACATTTGAATGTTAAGCCTATTAAATGTGATAAATGCGATATGACTTTTGTTGAAAAGGGGGATCTTAACAAACATTTGATAACTCATAATCCTGACCATAAGCCATTTATATGTGAAATTTGTTCGAAAAGTTTTAGTCGTAAAATAACTTTGACAAAacatcaaaaactacacactggattaaaagaatatatttgtaaaatttgtggGAAAGCTTTCGCACAATCACCGGGCTTGTATATGCATATGAAAACGCATGGATTTAATATTAAACCTGAAGGAGCTGGTTATTATGAACGACAATCTCATTTATTATTTCGAAATATGAATTCGGATAGAGCTAATTTAATATAA
Protein Sequence: MGRRRSKNGMIDIGEFQRLNSGRCMFKCKTCKQQMEIKDLNLFINHVKENHPIKNSNSESNVKADKVEFDKQNLRLLDENKLSKINKRTEVYDLEIAPENEIKPIPKLKINIKRCEVIKVTNQNFETINELQADTKLLESSKNITKVKINQNNIDLFSKINNIDTQTRYQDHNVNSDSDDYIDSGDFKKLEINFSILPKENSDISKSTIENSYNQNSESNCIVDSNNFNDINCNSNVNEPKETFLSKSRYFTSESDDFKTKIVDSDHDYDNFEKDICFTCEKCGIKYKKQSTLIKHLKICQRSKKKHKIKKKQKLIKAKEKNENGMYECSNCELEMSTVNELKLHEKLHILENIKQKIQCEICGKSLNSITGLNIHLMRHTGLSPYKCLICDRGFYNKYTLAAHQQTHNSEKEYKCEHCDKEYGRYVDLKRHVRYTHLKEKPNPVMCDLCGKSFSFAFNLKYHMRRHLNVKPIKCDKCDMTFVEKGDLNKHLITHNPDHKPFICEICSKSFSRKITLTKHQKLHTGLKEYICKICGKAFAQSPGLYMHMKTHGFNIKPEGAGYYERQSHLLFRNMNSDRANLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -