Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: -
Assembly: GCA_947095535.1
Location: OX352772.1:29708318-29710692[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.1 1.2e+03 2.2 3.1 1 13 116 128 116 132 0.85

2 14 0.00017 0.027 16.8 0.7 2 23 145 167 144 167 0.95

3 14 2.9e-05 0.0047 19.2 5.8 2 23 177 199 176 199 0.94

4 14 0.025 4.1 9.9 2.7 3 21 234 252 232 253 0.93

5 14 5.6e-07 9.1e-05 24.6 1.6 1 23 367 389 367 389 0.98

6 14 5.9e-06 0.00096 21.3 2.6 1 23 396 419 396 419 0.94

7 14 5.8e-06 0.00095 21.4 1.5 1 21 425 445 425 446 0.95

8 14 0.01 1.7 11.1 0.5 1 23 460 483 460 483 0.96

9 14 2.4 4e+02 3.7 2.8 1 23 489 511 489 511 0.93

10 14 0.00014 0.023 17.0 0.5 1 23 519 541 519 541 0.96

11 14 0.00065 0.11 14.9 1.4 1 23 547 569 547 569 0.98

12 14 7.6e-07 0.00012 24.1 2.0 1 23 575 597 575 597 0.98

13 14 1.6e-06 0.00026 23.1 2.0 1 23 603 625 603 625 0.99

14 14 0.0077 1.3 11.5 0.5 1 23 630 653 630 653 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.1	1.2e+03	2.2	3.1	1	13	116	128	116	132	0.85
2	14	0.00017	0.027	16.8	0.7	2	23	145	167	144	167	0.95
3	14	2.9e-05	0.0047	19.2	5.8	2	23	177	199	176	199	0.94
4	14	0.025	4.1	9.9	2.7	3	21	234	252	232	253	0.93
5	14	5.6e-07	9.1e-05	24.6	1.6	1	23	367	389	367	389	0.98
6	14	5.9e-06	0.00096	21.3	2.6	1	23	396	419	396	419	0.94
7	14	5.8e-06	0.00095	21.4	1.5	1	21	425	445	425	446	0.95
8	14	0.01	1.7	11.1	0.5	1	23	460	483	460	483	0.96
9	14	2.4	4e+02	3.7	2.8	1	23	489	511	489	511	0.93
10	14	0.00014	0.023	17.0	0.5	1	23	519	541	519	541	0.96
11	14	0.00065	0.11	14.9	1.4	1	23	547	569	547	569	0.98
12	14	7.6e-07	0.00012	24.1	2.0	1	23	575	597	575	597	0.98
13	14	1.6e-06	0.00026	23.1	2.0	1	23	603	625	603	625	0.99
14	14	0.0077	1.3	11.5	0.5	1	23	630	653	630	653	0.96

Sequence Information

Coding Sequence: ATGTTAAAAATATTTAAACCAAAACTTCCTCCTAATTTTGAATTACTTGAGCTTGAAAATGTTTGTAGAATTTGTTTAAGTTCTGCAAACAACTTGTTATCATTATTTAATAATGAAATTGATTCGGTAATATCGGAATTTTTACCACAGAAGATTTATCAAAAACCTTTACAACCTCACCACATATGTAACAAATGTTTTGAAGAAGCTAAAATTGCATATATATTTAAAAAACAATGCGAGTACTCTGATGAGTTAATTAAGTCATTATCAAATGATTTAAAAAGCCAAGATGAAAAAACAAATTATGAAAAAGAAACTCAAACAGATTTTTCTAATTTTGTATACCCATGTCAAAAATGTAAAAAAAATTGTAAATCATATAAAGTCTTAAACGGAGATCAAATAAAAGAACATAATAAAGCTGCAAGTACATGTAAACAATGTGGAAAATTTTTTACAAAAATTGCATCTTTAAGAGAGCACCTAAGTTCTGCCCATACGGGAATTGATTTAATAAATAACAATAAATGTCATCTGTGTAAGAAAAATTTTAGCAGAAAAGATCATTTAAAAAGACATTTAGCTAATATTCATTCAGTTAATCAAAAAATAAAAAAAGTAAATAAAAAAATAGAAATAAATCAAGTATATCAAGAAGAACATCTAAAATTTGTTGAAATAGGTAAATATGATTTTTGTGAATATTGTGCAAAAACTTTCAAAACTGATGATGATTTCAAAAACCATAAATGTAGCAAAAACTCTTTGGAAATGAATGTTTTAGAAAAGGATTGTGCAAATGATTTAGAAGAATTTTTTGTTGATTACGACATTAAAACAAATATTAAAGCTGGTAGTGAAAACAACTACAGTGAATATGAACAAGATTTTCCAGATGATACAAAAACAGATAATGAAAATGAATTTTCTATTAAAGTTTGTGAACAGAATAATACATCTGTTATGGAAATAAAAAAGGAGAATAAAATTACTATAGAAGGACTTAAAATTACACAAGAAATCGTGAAAACTATGATAAAAGAATCAAAAAAGAAAATTCCTAAAATAAAAGTAAAACCTAATGCTCATGGAAATTATGAATGTGAAACATGTCAAAAAGTTTTTACTAGAGCAGCACATTTAACCCGACATCAACTGTTACATTCAGGGGATCCAAAACCGTATGCTTGTACTATGTGTTCTAAAACATTTTCGAGATCGGATCATTTAAAGAATCATGTAAACGGATTTCATGCTGATTTAAGACCGTACCAATGTTTAACGTGTGAAAAATCATTTACCCGTAATGAACATTTAAAACGTCATACATTAATTTGTTCAACAGAAAGAAAAAGACGTAGAAAAGAAAAATTATTTTCTTGTAACATATGTATGAGGAAATTTTCAACTGAAAAATATGTTCAAGACCATATAGCAGTTCAACATAATGAAACAAAAGAGTTTTCATGTAAATATTGCTCAGCTAAAATTGTTGGTGCAAGTGAATATAAAAAACATTGTAAAAGTCATTATAATACTAGTTCAAAACAATTTCTTTGTTCCGAATGTGGTGGTAGTTTTACAAAGTTACAATATCTTATGATACATATAAGAAGACATACAGGTGAAAAACCATTTAAATGTCGATACTGTGATAAGGCTTTTCCAAGAACAACTGATCAATATGCTCATGAAAGATCACACACGGGAGAAAAAAATTTTCATTGTACAAATTGTCCAAAAGCATTTTCAACAGCTTATAAATTACGAGTTCATATGCGAATTCATACAGGCGAACGACCTTATAAATGTTTGTATTGTCCTAAGGCTTTTGCACAAAATAATGATTTAAAAGCTCATCATAGACGTCATACTGGTGAACGATTTTATTGTAATCTTTGTGATGTTGGTTTTGTTCAAATGTATGTTTTGAGGCAACATAAAAGACAAGTTCATGGTATTGATGAACCTCGAGGTAGAACTTCGTTGTTAGATAAAACGCAAACGATTTCAGAAGAACATTCTTTACTAACACATAAAATTATTGAAAAAACAAAATTATCCCTTCAAAATGATGATATTGAACAAAATAATGATATTAAAAACGAAATTATTGTTTGTGGGGTGGGTCATTAA
Protein Sequence: MLKIFKPKLPPNFELLELENVCRICLSSANNLLSLFNNEIDSVISEFLPQKIYQKPLQPHHICNKCFEEAKIAYIFKKQCEYSDELIKSLSNDLKSQDEKTNYEKETQTDFSNFVYPCQKCKKNCKSYKVLNGDQIKEHNKAASTCKQCGKFFTKIASLREHLSSAHTGIDLINNNKCHLCKKNFSRKDHLKRHLANIHSVNQKIKKVNKKIEINQVYQEEHLKFVEIGKYDFCEYCAKTFKTDDDFKNHKCSKNSLEMNVLEKDCANDLEEFFVDYDIKTNIKAGSENNYSEYEQDFPDDTKTDNENEFSIKVCEQNNTSVMEIKKENKITIEGLKITQEIVKTMIKESKKKIPKIKVKPNAHGNYECETCQKVFTRAAHLTRHQLLHSGDPKPYACTMCSKTFSRSDHLKNHVNGFHADLRPYQCLTCEKSFTRNEHLKRHTLICSTERKRRRKEKLFSCNICMRKFSTEKYVQDHIAVQHNETKEFSCKYCSAKIVGASEYKKHCKSHYNTSSKQFLCSECGGSFTKLQYLMIHIRRHTGEKPFKCRYCDKAFPRTTDQYAHERSHTGEKNFHCTNCPKAFSTAYKLRVHMRIHTGERPYKCLYCPKAFAQNNDLKAHHRRHTGERFYCNLCDVGFVQMYVLRQHKRQVHGIDEPRGRTSLLDKTQTISEEHSLLTHKIIEKTKLSLQNDDIEQNNDIKNEIIVCGVGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -