Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: -
Assembly: GCA_947095535.1
Location: OX352773.1:58710513-58714818[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00025 0.041 16.2 1.2 1 23 194 216 194 216 0.97

2 15 0.013 2.1 10.8 4.7 1 23 222 244 222 244 0.97

3 15 0.00032 0.052 15.9 0.1 1 23 363 385 363 385 0.98

4 15 4.7e-05 0.0076 18.5 1.9 1 23 392 414 392 415 0.96

5 15 3e-05 0.005 19.1 3.4 1 23 442 464 442 464 0.97

6 15 0.012 2 10.9 0.3 1 23 481 503 481 503 0.94

7 15 1.1 1.8e+02 4.8 0.2 1 23 509 532 509 532 0.80

8 15 0.019 3.1 10.3 0.7 3 19 541 557 540 558 0.95

9 15 0.00018 0.029 16.7 5.4 1 23 567 589 567 589 0.96

10 15 0.027 4.4 9.8 0.3 3 23 596 616 594 616 0.96

11 15 4.8e-06 0.00079 21.6 0.3 1 23 624 646 624 646 0.98

12 15 0.0018 0.29 13.5 0.1 3 23 654 674 652 674 0.97

13 15 9.6e-05 0.016 17.5 0.5 1 23 680 702 680 703 0.95

14 15 0.11 18 7.9 0.2 1 23 713 735 713 735 0.96

15 15 0.00053 0.087 15.2 0.1 1 20 1292 1311 1292 1314 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00025	0.041	16.2	1.2	1	23	194	216	194	216	0.97
2	15	0.013	2.1	10.8	4.7	1	23	222	244	222	244	0.97
3	15	0.00032	0.052	15.9	0.1	1	23	363	385	363	385	0.98
4	15	4.7e-05	0.0076	18.5	1.9	1	23	392	414	392	415	0.96
5	15	3e-05	0.005	19.1	3.4	1	23	442	464	442	464	0.97
6	15	0.012	2	10.9	0.3	1	23	481	503	481	503	0.94
7	15	1.1	1.8e+02	4.8	0.2	1	23	509	532	509	532	0.80
8	15	0.019	3.1	10.3	0.7	3	19	541	557	540	558	0.95
9	15	0.00018	0.029	16.7	5.4	1	23	567	589	567	589	0.96
10	15	0.027	4.4	9.8	0.3	3	23	596	616	594	616	0.96
11	15	4.8e-06	0.00079	21.6	0.3	1	23	624	646	624	646	0.98
12	15	0.0018	0.29	13.5	0.1	3	23	654	674	652	674	0.97
13	15	9.6e-05	0.016	17.5	0.5	1	23	680	702	680	703	0.95
14	15	0.11	18	7.9	0.2	1	23	713	735	713	735	0.96
15	15	0.00053	0.087	15.2	0.1	1	20	1292	1311	1292	1314	0.94

Sequence Information

Coding Sequence: ATGGAAAATCAAGGATTCTCTATACAATGGATACCAGTTGAGAATTCTTTAAATGTAACAAATGAAGAAGTTATTACTATGGAAGCTCGTACCCAAGAAGATAACAATGTACATAATTACATAGAAATGTCTTCATTACCAACAAATTTAGATCAAATAGCTGCTGAAAATTTAATTTATATGGCACAAGATGGACATATTGATAATATTTGTGAAGATTTAATAGAAGAAGATCCTGATGGTGTTATAGAACATTCATCTACACATAATCAAATTGTACGAGTATTTCATACCAATAGTCAAAACAACAATTGTAATCAATCTGAAAATATAACTGAATCTACAATTCAAAGTCATGAAGTTGTTAACGCTGATAGTGAAATCGTAGACGACCAATCACAATATTTTGAGTGTCAAGTTACAACGGAAGAAATCATTACTGATGATTGGGTACAACAACAAGGAGAAGAAAGAGTTGAAGTATCCGTTGATCAAATAACTGCTGGTGATGGTCAAGGTATCGAAGATATTGATGTTCCTTTACCAACTGATCAGGATGAATATACAGCACTTAGACCATATCCATGTGATTTCTGTAGTAAACGTTTTAAAAAGAAACTAAGTTTAATGAATCATATGATAGCACATAAAAATGATCGTCCTCATATTTGCAATTTTTGTGGTTGCCGATATATGAGACGTACAGATTTAATGAATCATTTAAAAATTCATGCCTGTATGGGTGAGCATCATATTGACGAATTTGATGAGAATTATATGCATTTAAATGATCATATGATTGATACAAAACCAACCAATCGGCGTAGTGCAGATCATTATTATGATCAAGTATGGGATGAAGTTGAAGCGATTACAGCAGAATATGAAAAGCGTAAACAAAGCTCTAAAATTAAACAGAATACGAATAATAATAATTTAACAATAGAAGGAGGAAGAGGAGTAAAATATAAACATGGACGAAACAAGAAAAATATTGAAATAAAAAATGAAATTATTAAAACAGAAGATCAAAATAACGGTGATGAAGAATTAATTCGTTATCCAATTTTAGATGATAGAAAACCATTTGTTTGTCAACGATGTGGAATTGCTTTTGCAAGAGAAAAAGCGTTGTTATCTCACAAAAGAATTCATGCAAATAATTCGCCATCTTTTGAATGTAATAATTGTAATGAAATGTTTTACGATGTTGATACTTTAAATGACCATCAAAGAACTCATCATTTCGAAGAAAGTCATTCCGAATATGAACCAGGACAAGGCGAAGATAGTGATTCAAACGATTCATCAAAATATGGCGAATTCTATTGCAATATTTGTGGAATGTCATTTCATCGTCAGGATTTACTGCGAAGGCATTCAAAATCACATATAAAAAAAGAAACAATTGATAACAATTATATCGGAACAGAAATGCGTCATTGTTGTAATGTTTGTGGTGAAAATTTCAGTGAAGCTTTGGATTTACTTGCACATGCTGAAATTCATGCAAGATCACAACCGTTCAAATGCGTGCTTTGTGGTGAAACTTTTTTAGAAGAAGCGACGATAAAAAAACATGTTTCAAATGTTCATTCAAAAGAACTAACCACGAATTCTTGTGTTTTATGTGGAAAAGCTTGTAAAGACAGAAAATCTTTGATTAAACATGCTTGGGAGCATTCAAAAGAAAAAAATCATTCATGTTCTAAATGTGGAAAAACTTTTCATAATAAAGCTAGATTGAATCGCCATATGGTATCACATCGAAATAAAACTGTTATTTGTGAAATATGTCAAGAAGAATTTCCTGATGGCAGATCATTAATGAATCACCGTCATTCACATTCAAatacatctggaaaattgtttccatgtaatgaatgtggtaaaacatttggatcccgtagttcacaacaaattcatattcgaatacatacaggtgaacgaccctatggttgtcgttattgttggaaagcattcgcagatggtggaactttaagaaaacatgaaagaattcatacgggagaaaaaccatatgcttgttcggtatgtccaagagctttcaatcaaagagttgttttacgcgagcacataagatcacatCATTCTGCTGTTGATGTGAAAAGAGGAACTTATTTTTGTCCTGTATGTACCAGTGATTTGCCAAGTTCATCTGAATTAATACAACATTTAATTCATCACAGTGATATGCACACAGCTTTGAGAAGACAACCCGTTACCGGTCCGCGTAAATACAAAAGAAGACGAAAATTAAAACCTCATGAATTAGAAAGATTACGATCAGAACAGCGAGATGGAATAAGTGATATAGATTATTCTGATTTAGATATGGGTGATGTTGATGATTTACTTGGGATTACAACAAAACCTAAAAAATATAACCGATCACCAAACACTTCATCTGTCAAATTAGAAAAAGAACGTGAACGAACATCATCAACTTCAAGTACAAATCGAATTAGAAAATATTCAAATAATTCTGATAAATTAAATTCAAGCAATTGGCAAGCAAAATTAATATCATCATCAACTAATGAAGATTATAATTCTGTAATATCGAATTTAGAAAATACATTACAAAATATCGATACACTCGTAGTTAGTAATACATCTTCAACCCATATTCAAAATCAAAGTTCAATTAGTAATAATGAAAATTTACCACATCATTTATATGAATGTTCTGATCTAAGTTCACCAACAATTGAATGTAGTAAAACTACACCAATTAATAGTAATTATATTACTAATTCAACAACAAAAAATAACAAAACAAATAGTGCCAAAAATAAAAAATCAATTTCTGCTCATTACAATAATAATAGTAGCAATATATCAAATGATTATAATAAAAAACCAAAAATGATACATACGCAAAAGACACGAATTTCAAACGATGAAGGTAAACGAAGAACTCGTACATATATTACCTCAAAACCAGTTTCTTTACATCGTAATGAAAACTATTTCAATGCAATAAATAATATTAAATCTGAACAAATATCTACTAACAATGATGCTGATACTATAATACCTGATATTATTAACCATAGTCCTCCAATACATATTAAAAAAGAAAAAATTTCTGTTTTAGATCGAGATCATCACAATATTATAACATCTGTTGCCACTGAATCAGATTTATATGATGCACAACTATTGCTTGAAGCTGCATCAGTTCGTAAAGAAATGGAAAAATATAACCCAAATGTCGTTAATGATTTAGATGAAATTTTAAGATCACCTGATAAAACAAAATTAACATCACCAAATCGTTTTAATGATGAAATTGAAAACAAATCTGCTATAAATGTATTACAATCTCCTATAATGAAAAGTGATAGTCCTGGTGATGGTCCAACTGATAATTACATATTTGAAGAAAGACGTTCAACACGATCACGTCGTATTGTACCAAATCGTAAATATTTAGAATATGAAACAACAACACCACCCCGTACAAATAAATCTCAAAAAAATTTAAATATAAAACAAAATATAATAACAGGAGCAAAAGGAAAACAACATAACCAGCAACAAAAAAATGCATTAAAAACTAGAAATGAATTAAAATACTATAATGATTTACCAAACAACAATAATAATAATATTCAAATAAAATATGAAATTGAATCAGCAAGTAATGGAACAACACAAATTAAAAAAGAACAAAATCATGATCATGATGTCATAAATGATGCCTTAAATAATTCAAATGCAAGTAGTAGTTGTAACAGTAATATAAGTATAACTAGTGACCGTAATATCAATAATAATAATGATACAACAACAACAATAACAAAATCATCAATAACTTATACCATTAGTGAATTAAATATATCTAAAAGTTTTAAATGTGAAATGTGTTCAGCATCATTTTCAGATCGTTCTCAACTTTTAGTTCATGTTCCAATTCACATTTAA
Protein Sequence: MENQGFSIQWIPVENSLNVTNEEVITMEARTQEDNNVHNYIEMSSLPTNLDQIAAENLIYMAQDGHIDNICEDLIEEDPDGVIEHSSTHNQIVRVFHTNSQNNNCNQSENITESTIQSHEVVNADSEIVDDQSQYFECQVTTEEIITDDWVQQQGEERVEVSVDQITAGDGQGIEDIDVPLPTDQDEYTALRPYPCDFCSKRFKKKLSLMNHMIAHKNDRPHICNFCGCRYMRRTDLMNHLKIHACMGEHHIDEFDENYMHLNDHMIDTKPTNRRSADHYYDQVWDEVEAITAEYEKRKQSSKIKQNTNNNNLTIEGGRGVKYKHGRNKKNIEIKNEIIKTEDQNNGDEELIRYPILDDRKPFVCQRCGIAFAREKALLSHKRIHANNSPSFECNNCNEMFYDVDTLNDHQRTHHFEESHSEYEPGQGEDSDSNDSSKYGEFYCNICGMSFHRQDLLRRHSKSHIKKETIDNNYIGTEMRHCCNVCGENFSEALDLLAHAEIHARSQPFKCVLCGETFLEEATIKKHVSNVHSKELTTNSCVLCGKACKDRKSLIKHAWEHSKEKNHSCSKCGKTFHNKARLNRHMVSHRNKTVICEICQEEFPDGRSLMNHRHSHSNTSGKLFPCNECGKTFGSRSSQQIHIRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSAVDVKRGTYFCPVCTSDLPSSSELIQHLIHHSDMHTALRRQPVTGPRKYKRRRKLKPHELERLRSEQRDGISDIDYSDLDMGDVDDLLGITTKPKKYNRSPNTSSVKLEKERERTSSTSSTNRIRKYSNNSDKLNSSNWQAKLISSSTNEDYNSVISNLENTLQNIDTLVVSNTSSTHIQNQSSISNNENLPHHLYECSDLSSPTIECSKTTPINSNYITNSTTKNNKTNSAKNKKSISAHYNNNSSNISNDYNKKPKMIHTQKTRISNDEGKRRTRTYITSKPVSLHRNENYFNAINNIKSEQISTNNDADTIIPDIINHSPPIHIKKEKISVLDRDHHNIITSVATESDLYDAQLLLEAASVRKEMEKYNPNVVNDLDEILRSPDKTKLTSPNRFNDEIENKSAINVLQSPIMKSDSPGDGPTDNYIFEERRSTRSRRIVPNRKYLEYETTTPPRTNKSQKNLNIKQNIITGAKGKQHNQQQKNALKTRNELKYYNDLPNNNNNNIQIKYEIESASNGTTQIKKEQNHDHDVINDALNNSNASSSCNSNISITSDRNINNNNDTTTTITKSSITYTISELNISKSFKCEMCSASFSDRSQLLVHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -