Pnob065707.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- ehn-3_1
- Assembly
- GCA_947095535.1
- Location
- OX352774.1:183733303-183737773[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.11 18 7.9 0.9 1 23 310 333 310 333 0.95 2 17 0.0011 0.18 14.2 0.7 1 23 433 456 433 456 0.97 3 17 5.2e-05 0.0084 18.4 3.4 1 23 474 496 474 496 0.98 4 17 2.8e-05 0.0046 19.2 2.4 1 23 502 525 502 525 0.93 5 17 0.24 39 6.8 1.8 1 23 531 555 531 555 0.93 6 17 1.3e-06 0.00022 23.4 0.5 1 23 561 584 561 584 0.96 7 17 6.3e-05 0.01 18.1 7.9 1 23 592 614 592 614 0.98 8 17 0.02 3.2 10.2 0.4 3 23 622 642 620 642 0.97 9 17 0.00096 0.16 14.4 0.1 1 23 648 671 648 671 0.97 10 17 9.8 1.6e+03 1.8 0.6 1 23 823 846 823 846 0.90 11 17 0.00013 0.022 17.1 2.2 1 23 990 1012 990 1012 0.97 12 17 0.00032 0.051 15.9 5.5 1 23 1018 1041 1018 1041 0.96 13 17 7.2 1.2e+03 2.2 0.6 1 12 1047 1060 1047 1068 0.90 14 17 4.4e-07 7.1e-05 24.9 2.4 1 23 1077 1100 1077 1100 0.98 15 17 0.12 19 7.8 7.4 1 23 1108 1130 1108 1130 0.96 16 17 0.00026 0.042 16.2 0.1 3 23 1138 1158 1136 1158 0.98 17 17 0.0057 0.93 11.9 0.1 1 23 1164 1186 1164 1186 0.98
Sequence Information
- Coding Sequence
- ATGAGTACCCTTAAGAAAAAAAGAATAATTAGGAAAAATTCAGATAAAGAGAAACTTAAGAAAAAATCGAATTCGAAAAGAGATTCTGAAAAAGAATATGAAACAACACTAATTGCAGAAATAGCAAGAAGACCATTTCTTTATGACAAAACTCATGAATACTTTTTTGAATTTCAACTTCGTATAGATGCCTGGCAAGAAATTGCAAAGCATTTAAATAAATCAGTGGATGAATTGAAAAGAAAATGGGAAAGAATAAGAAACACCTACAGAAAATATTACAAGAAGATGAACAGCAATCTAAATGAAGATGAATTTGCAATAAAATGGGTTCATTATGAAAATTTAAGATTTTTAGATGGGCATATCAAAGTTGATGACACTCTTCCATCTGAACATAATGAAATTCAAAAAGGATTTGATGCTAAATTAATTACAGAAATTGTCAAACGAAAACATTTATATGATCCAAATGACCCTTCATTTAGAAACAAAAAAGAACGTGCTGAAACTTGGGATGAAATTTCCAAAATTATGAATGCGTCAGTTGAAATGTGTAAAAAACGATTGAATTATTTGCGTAATACATTTCGAAAGTTCAATAAAAAGGAAATGAAAGATAATAAGACTATTAATTGGGTTCATTATAACAGTCTCAAATTTCTTTTGGAATACGAATCTGGAATCACACCACCGCATTTAAGACCACCACATACTTATAAACCATCAAAACCGGAAATTCCTTCTGAACTGCGAAATTTACCACCATTAGGAGATACTTCTTTAAAAACTGAAAATATAGACTCTACTGAGTTTAGTGATATTTTAGAAAATTTTTGTGCTGATGAAGAGGAAAAATCAGATTTTAGTGCAGAAATTCCTCAAAAGTGTGGTGAAATTTTAATTACAAAAACTGAAAAATTTTCTTATAAATGTTGTGTTTGTGATGATAGTTACGAAGATATTGATAGTTTTACTAATCACATACTAGAAAATCATATGGGACGGAATGCAAATGTTTCAATTTTTGAAATTCATTCTATAGGAAAAATTGAAAATGATTCTATTGAAGATAATTTTTTTGACGAGGTTGATAATCACAGTTCCAGTGAAGGAGAAACTGAAAAAATCATGAAAACGAATGAATTAAATGTTGACGATAAAGATAAAGATTCTTTAAAACGCATTAAAAATGAAGTAAAAGAAATTTCGTTTTCTGAAGAAAAATTACATTTACCAATTTTAAATGACACCTCTGAAATAAAAAGGCAAGAAAAATTAGAAAAGGTTGGAAAATATCCATGTGGTTTATGTTCATTTTCATTTGATAAAGAAGAAAATTTGAAGAAGCACGAAAAATCATCTCATCGCAAAGTAAATATTGCAAATAATTCTGTGCAAAAGAAAGAAAGTGGAGTTTATCCATGTGATGAATGTGATAGAAGATTTCAATATAGGCATGatttacgtaaacataaaagaatacatacgggtgaacgcccatatcaatgtacaatatgtgagaaaaaatttaggcagtatgataacttaaaagaacattatatatttaggcatacagaagataaaccTTTTACGTGTAGACATGAAGGATGCGATAAAAAATTTAAAACAACAAGAACAAGAGCGGCACATGAAATTATTCATAGTGGGGATTTACCATTTCAATGTGAAGAATGTGGTAAGCGTTTTCCGAGAAGTTACGATTTAAAAATGCATCGAAGTATATGGCATATGGATAAAAATGATCGACCTTTTAAATGTCCACATTGTACAAAATCTTTTTGTACTCAGCAGAATTTAAAATATCATGTTTATACACATACTGGAGAAAGGCCTTATGGTTGTTCAGTTTGTACTTCAAAATTTACAAAACCATGGAGCGTTAAGGAACACATGAAAATACATTACGGTGAGCGTAATTATGTTTGTCAAGTGTGTGGTGCAGCATTCAATCAAATAGCTGGACTTGTACGGCATAAAAAAAGACTGCATGAAGTTACTGCAAGTCTTATTAATCCTAAAATAGAATTTGAGCTAAAGTTAATAGATGAAATAAAAAAAAGGCCTTGTTTATATAGTGAAGTAAATAAAGGAAGGGAGCACAATTCTATTAAAACAAAAGCTTGGAATGAAATTTATTGCAAACTTGGCCAATCAGTTGAAATTTGTAAAAGAAAATGGAATAATTTAAAAAGCAATTTTCGAAAACATCGTATTAACGCGCAAATAAGAAAATGTGAGGACGTAACATGGGTTCATTATGAAACTATTAAATCTTTTTTAGAAGTTCCAAAAATAGTAAATAACGATGAAACGAAAATAGAAAATAATAGAGAAAATATGGTTGAAAAAAGTATTGAAATAGAGCTGATGCATGAACAGAAGCTCCAAGACATTTATAATAAATGTGGAGAAATAATGATTTCAAGTAATAAAAAATTTAAATTTGTTTGCTGGATTTGCCATGAAGAACATGACACAATTGAAGCCTTTTCATCTCACATTTTAAAAATACATTTAGAATTTAATAAAAATTTAATAGAATTTCAAAATAAATTATCCGATTTTGTTCAAACTAATTGTAATACTAAAAATATTCAATCTAATGAACAAAATCTTCTAACGAATAATGGAATTGCAATAATAAAAAAAGAGAAAATAAATGATTGCGGTGCCAAAAAAATTTATTGCAATAATGAATCTTTCCTTAAAAATAAAGAGACTACCATAAAAACAGAAAATGATATGTTACATGAAATTTTTGGAAAAAACCAAAAATTTAATAATGATAAACAATCTTGTATTTCATCAGATTATATTTTAAATAACTCATTAAATGAATCAAAAACGAACAGTACAGAAAAAACTTCAAGAAAACTTCAAGAGATAGCTGATAATTGTATCATTACGTATCCAAAAAAAAATCGTGAATCAAAACGTGGAATATTTCCATGTGAACAATGTAAGCGTATTTTTGAATATAAAAGTCAATTATATCGACACAAACGTTtacatagcggagaaagaccatacaaatgtgaagtttgtgaacaatcatttaaacataatcgaaatttaaaggatcattattcagtttgtcatactgaagatagaccgTTTccttgtagacataaaggatgtaacaaaaaatttaaaacaattaggatacgtaaattacatgaaattttacatacaaatgatttaccttttcaatgccaagattgtggcaagtgttttccacaaaatagttatttaattacacatagaaatacatggcacgtagataaaagtaattatcgtcataaatgtcaattttgtgaaaaaacattttattctaaacaaaatttaaaatttcatacatatacacatactggtgaacgaccatatggttgtccaatatgCCCAACAAAGTTCACTAAACCTTGGAGCGTTAAAGAACATATGAAAATACATTCAGGAGAACGTAAATATATTTGCCAAGTTTGCAGTGCTGCTTTTAATCAAATAGCTGGTTTAATTAAACATAAAAAAAGACATGAAGAAATAGTAGAATAG
- Protein Sequence
- MSTLKKKRIIRKNSDKEKLKKKSNSKRDSEKEYETTLIAEIARRPFLYDKTHEYFFEFQLRIDAWQEIAKHLNKSVDELKRKWERIRNTYRKYYKKMNSNLNEDEFAIKWVHYENLRFLDGHIKVDDTLPSEHNEIQKGFDAKLITEIVKRKHLYDPNDPSFRNKKERAETWDEISKIMNASVEMCKKRLNYLRNTFRKFNKKEMKDNKTINWVHYNSLKFLLEYESGITPPHLRPPHTYKPSKPEIPSELRNLPPLGDTSLKTENIDSTEFSDILENFCADEEEKSDFSAEIPQKCGEILITKTEKFSYKCCVCDDSYEDIDSFTNHILENHMGRNANVSIFEIHSIGKIENDSIEDNFFDEVDNHSSSEGETEKIMKTNELNVDDKDKDSLKRIKNEVKEISFSEEKLHLPILNDTSEIKRQEKLEKVGKYPCGLCSFSFDKEENLKKHEKSSHRKVNIANNSVQKKESGVYPCDECDRRFQYRHDLRKHKRIHTGERPYQCTICEKKFRQYDNLKEHYIFRHTEDKPFTCRHEGCDKKFKTTRTRAAHEIIHSGDLPFQCEECGKRFPRSYDLKMHRSIWHMDKNDRPFKCPHCTKSFCTQQNLKYHVYTHTGERPYGCSVCTSKFTKPWSVKEHMKIHYGERNYVCQVCGAAFNQIAGLVRHKKRLHEVTASLINPKIEFELKLIDEIKKRPCLYSEVNKGREHNSIKTKAWNEIYCKLGQSVEICKRKWNNLKSNFRKHRINAQIRKCEDVTWVHYETIKSFLEVPKIVNNDETKIENNRENMVEKSIEIELMHEQKLQDIYNKCGEIMISSNKKFKFVCWICHEEHDTIEAFSSHILKIHLEFNKNLIEFQNKLSDFVQTNCNTKNIQSNEQNLLTNNGIAIIKKEKINDCGAKKIYCNNESFLKNKETTIKTENDMLHEIFGKNQKFNNDKQSCISSDYILNNSLNESKTNSTEKTSRKLQEIADNCIITYPKKNRESKRGIFPCEQCKRIFEYKSQLYRHKRLHSGERPYKCEVCEQSFKHNRNLKDHYSVCHTEDRPFPCRHKGCNKKFKTIRIRKLHEILHTNDLPFQCQDCGKCFPQNSYLITHRNTWHVDKSNYRHKCQFCEKTFYSKQNLKFHTYTHTGERPYGCPICPTKFTKPWSVKEHMKIHSGERKYICQVCSAAFNQIAGLIKHKKRHEEIVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -