Pnob041525.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:60086701-60088844[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0041 0.66 12.4 1.7 2 23 128 149 127 149 0.97 2 16 1.1e-05 0.0018 20.5 3.3 3 23 159 179 157 179 0.95 3 16 5.4e-05 0.0088 18.3 7.1 2 23 267 288 267 288 0.97 4 16 0.002 0.33 13.4 2.4 2 23 298 319 297 319 0.95 5 16 5.3e-05 0.0087 18.3 3.1 1 23 323 345 323 345 0.98 6 16 0.00031 0.05 15.9 2.8 1 23 351 374 351 374 0.98 7 16 0.52 85 5.8 4.6 1 23 379 402 379 402 0.94 8 16 4.6e-05 0.0075 18.5 3.6 1 23 422 444 422 444 0.98 9 16 0.0002 0.033 16.5 2.0 2 23 453 474 452 474 0.93 10 16 0.00058 0.095 15.1 0.8 1 23 478 500 478 500 0.97 11 16 0.87 1.4e+02 5.1 3.0 2 20 507 525 506 529 0.81 12 16 2.5e-05 0.0042 19.3 4.7 1 23 534 556 534 556 0.98 13 16 3.6e-06 0.00059 22.0 0.4 2 23 563 584 562 584 0.97 14 16 0.2 33 7.1 0.3 5 23 596 614 590 614 0.88 15 16 0.092 15 8.1 0.5 1 23 620 644 620 644 0.92 16 16 2e-06 0.00032 22.9 0.1 1 23 650 672 650 672 0.98
Sequence Information
- Coding Sequence
- ATGGACGAATTATTAGAAAATACAATTCTTATTAAAACTGAAATCGACACTTTTTCGGATTCTGATGTTGATTTTCATAATTTATTACCTACAAAATGTGGACTAATTTTTGTTTGTTCGGATTCAACTTTTTATATAAATTGTATTGTAGAAAACTGCCAATCAAAAAGGAATTTTCATGAAATTAATAGTTTTTTTGAACATTTAGGAACAAGCCATCATAAAAGGATTATAGATACTATTACTAATAAAATTGAACCAATTGAATGTATTAATACAGTAGATTGCGTAGCAACGGAGGAAATTAATAAAAATGTACAGGAAAATGGAACAGATACTTTAAAAGAAGATCCACACAAAATAGCAGATAAAAATAATCTTCAATGTAATATATGCCAAAAACTATTTTTAAAACCAAACTATTTAAGAAAGCACTTGAAACGACATTCTGTCGAACCAAAAGCAAAAATAAATTGTCCTCATTGCACGAAAACTTTTAAGCATTCTGGTTATTTACGTTCGCATATGGTTGTGCATAATAAAAATAATACAAATACTTTCAAAGCATCAGCAGAATTAATTAAAAACGAATCAGAAAAACCAGAAAATAATGAAGAAAAAAAAGAAGTAAATTATTTTATTAATAGTCCAGAACAAACTACAGATCTTAACAATTCTTCGGACATTGAAAATGATAATATCTCTCCAACTCAAAATTTGGAAAATACACCTGCTGTAGATGTAAAAAATATTACTTCAATATTAGAAACGTCTTCATCACCCAGAAAGTTAACCAGAACTTGTCATATTTGTAATAAGACTTTCCATTCAAGAAAATATTTAAGAAGACATATTCGTCTTCATAGTAATATAAGACCTATTAAAATTATACCCTGCCCTAAATGTAATAAAATATTTAAATACGAACATCATTTAAGATTTCATATGGTTGTACACGATACAGAACATAAATGTTCAGATTGTAATCAAAAATTTGATAGTAATGCTAAGTTACAAAAACATTTAATAAGGCATTTAGGAATAAAATCTTTCCAGTGTGAACAATGTAGTTCAAAATTTACTTTTAGTAAACAATTGCAAAATCACATTAAAAAAATTCATATTGAAAAAATTTTCAAATGTTCAGAATGTATTGAACATTTTTGTAATAACCGACAATTGGACACACATAAACTAAACGTCCATGGGATTTATATTGAGGAAAGCACAAAGTTAGAAACACCCAAAGAAAAAAAATCAATTCATAAGTGTGATGTCTGTACTAAAATATTTAAAACAAACAAAATTCTTAAAAGGCACATGAGAGTACATATTACAAAATCTGCTGATCCGATTCCATGCCCAAAATGTAAGAAAGCTTTTAAATATGAACATCATCTGAAGATGCATCTTGTTGCTCATGATAAAATACATAAATGCTTACAATGCGGAAAAATTTATGCTAATAGACCATCTTTACTGAATCATTTGGAATACCATAGTGGAGAAAAAAAATTAAAGTGTGAACATTGTGATACATGGTGCTTTACAAAACTTCAATTAAAACGGCATGTGGTTGATGTACATGCCGAAAAAAAATATGAATGTGAACATTGTGGAAAAAAATTTAAGAAAAAATATTGTCTTATCGGGCATGTAAGAATACATACTAAAGAAAAACCTTTGGTTTGTGAGATTTGCGGAAAGAATTTTTACACACCATTTTTGTTAAATAATCATTTGAAACGACACAATAATCAAAGAGATTTTAAATGTATATTTGAAGGTTGCAATAAAAATTTCTTTACTAGAGTTGCGTTAGTTGATCATGAAGTAACTCATACAAAGCTTAAACCATATTTTTGTGCAGTAGAAGGTTGTAATTCTCGATTCACTTTACGTAGTGGCTTAGTAAAACATAAAAAATTACATAGTAATGTAAAAAATTATATATGTAAAATATGTGGAAAAGCTTATGCTCAAAGTCCTGGCTTATATGCTCATATGAAAACACACGGACAACCATTACCAACTTCTTAA
- Protein Sequence
- MDELLENTILIKTEIDTFSDSDVDFHNLLPTKCGLIFVCSDSTFYINCIVENCQSKRNFHEINSFFEHLGTSHHKRIIDTITNKIEPIECINTVDCVATEEINKNVQENGTDTLKEDPHKIADKNNLQCNICQKLFLKPNYLRKHLKRHSVEPKAKINCPHCTKTFKHSGYLRSHMVVHNKNNTNTFKASAELIKNESEKPENNEEKKEVNYFINSPEQTTDLNNSSDIENDNISPTQNLENTPAVDVKNITSILETSSSPRKLTRTCHICNKTFHSRKYLRRHIRLHSNIRPIKIIPCPKCNKIFKYEHHLRFHMVVHDTEHKCSDCNQKFDSNAKLQKHLIRHLGIKSFQCEQCSSKFTFSKQLQNHIKKIHIEKIFKCSECIEHFCNNRQLDTHKLNVHGIYIEESTKLETPKEKKSIHKCDVCTKIFKTNKILKRHMRVHITKSADPIPCPKCKKAFKYEHHLKMHLVAHDKIHKCLQCGKIYANRPSLLNHLEYHSGEKKLKCEHCDTWCFTKLQLKRHVVDVHAEKKYECEHCGKKFKKKYCLIGHVRIHTKEKPLVCEICGKNFYTPFLLNNHLKRHNNQRDFKCIFEGCNKNFFTRVALVDHEVTHTKLKPYFCAVEGCNSRFTLRSGLVKHKKLHSNVKNYICKICGKAYAQSPGLYAHMKTHGQPLPTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -