Basic Information

Insect: Poecilobothrus nobilitatus
Gene Symbol: -
Assembly: GCA_947095535.1
Location: OX352774.1:194091004-194094318[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5.6e-05 0.0092 18.3 2.9 1 23 380 402 380 402 0.98

2 18 0.00046 0.075 15.4 0.3 1 23 408 430 408 430 0.97

3 18 2e-05 0.0032 19.7 1.3 1 23 436 458 436 458 0.98

4 18 3e-05 0.005 19.1 3.1 1 23 464 486 464 486 0.97

5 18 5.6e-05 0.0091 18.3 4.5 1 23 492 514 492 514 0.99

6 18 0.035 5.7 9.5 7.6 1 20 520 539 520 542 0.90

7 18 1.3e-06 0.00021 23.5 4.6 1 23 548 570 548 570 0.98

8 18 3.2e-06 0.00053 22.2 2.8 1 23 576 598 576 598 0.97

9 18 9.5e-05 0.015 17.5 6.8 1 23 604 626 604 626 0.97

10 18 0.00068 0.11 14.8 6.6 1 23 632 654 632 654 0.97

11 18 6.3e-06 0.001 21.3 4.5 1 23 660 682 660 682 0.98

12 18 1.5e-05 0.0024 20.1 8.1 1 23 688 710 688 710 0.98

13 18 8.8e-06 0.0014 20.8 8.0 1 23 716 738 716 738 0.98

14 18 3.2e-06 0.00052 22.2 7.9 1 23 744 766 744 766 0.98

15 18 0.00042 0.068 15.5 9.5 1 23 772 795 772 795 0.95

16 18 0.00026 0.043 16.1 0.4 1 23 801 823 801 823 0.97

17 18 0.0011 0.19 14.1 4.4 1 23 833 855 833 855 0.99

18 18 3.7e-06 0.00061 22.0 3.1 1 23 861 884 861 884 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5.6e-05	0.0092	18.3	2.9	1	23	380	402	380	402	0.98
2	18	0.00046	0.075	15.4	0.3	1	23	408	430	408	430	0.97
3	18	2e-05	0.0032	19.7	1.3	1	23	436	458	436	458	0.98
4	18	3e-05	0.005	19.1	3.1	1	23	464	486	464	486	0.97
5	18	5.6e-05	0.0091	18.3	4.5	1	23	492	514	492	514	0.99
6	18	0.035	5.7	9.5	7.6	1	20	520	539	520	542	0.90
7	18	1.3e-06	0.00021	23.5	4.6	1	23	548	570	548	570	0.98
8	18	3.2e-06	0.00053	22.2	2.8	1	23	576	598	576	598	0.97
9	18	9.5e-05	0.015	17.5	6.8	1	23	604	626	604	626	0.97
10	18	0.00068	0.11	14.8	6.6	1	23	632	654	632	654	0.97
11	18	6.3e-06	0.001	21.3	4.5	1	23	660	682	660	682	0.98
12	18	1.5e-05	0.0024	20.1	8.1	1	23	688	710	688	710	0.98
13	18	8.8e-06	0.0014	20.8	8.0	1	23	716	738	716	738	0.98
14	18	3.2e-06	0.00052	22.2	7.9	1	23	744	766	744	766	0.98
15	18	0.00042	0.068	15.5	9.5	1	23	772	795	772	795	0.95
16	18	0.00026	0.043	16.1	0.4	1	23	801	823	801	823	0.97
17	18	0.0011	0.19	14.1	4.4	1	23	833	855	833	855	0.99
18	18	3.7e-06	0.00061	22.0	3.1	1	23	861	884	861	884	0.97

Sequence Information

Coding Sequence: ATGAATTCTGAGCATTCAGTTGAAGCTGGTACAAGTCTAGAACAGAGACAACAAATACAAAGGCATTCACCACAACATCAATTATCAAATCGACATGAAACTCAACCAAATGAATTAGGAAAATATTGGGTTGTAACTAATTTAGTAGCTGGATCAAACTCAAATCAAAATAATTATGTTTCTGCACCTGTTACCACTACTGTATCTACTTTACCACCGCCTATATCATCAACTCACTCTTCAAAGCCAAGTAATATTATAAAAACTGATATGATAAAACAAGAAGATGTACGTCAGACTCCGGTTACTTCAATGAATAACAGCACAAATCCAATGCAATTATCAAATTCTATTATGCATACTTCAAATAATTCTCATCAATTATCAAATGGGACAATAATAACTTCAAATAATTCATCACAACAGCCACAGCAATCTCAATTGCATCATCATCCTGTCCAAGTTCAAATAAATCCAGAAGTTGTAATAATGGAACATGGATCAGTTGAAAAATCCAATGATGGTGGAAACGGAGTTAATAAAATTGGAGATATAAGATCAGCACATAATATAAATCATAGTAGTGAACAACAAAATTTGTCACTTGAAAGACATATACCAAATTCTATAATAGATTCTATTAAACAGGAAAAAATGTATACGAATATTAAACCAATAACTACGGGTATTGATACCCGATCACAAGCTTTAAATATTGATAGCAAAGCTAATGTTCAGCATTTATTAGATGCTAGAAATTCAGAAGGTCAGTTAATAAAAACTCAACCTCCGGATCACGAAATAGGAAAGCAACCTTTAGGAGTTGAAATGTATAAAGTGAACATAGAAGATTTAAGTCAATTTCTATCATATCATGAGGTATTTGGTAAAATTCATGGTGACGTAATAAACCATCCAGTGCCTCATTTATCTACTAGCCATCATCAAACGGGTACTTCTTCTGAAAATAACAACCAGAATATACAACAGCAGGTTTTACCAATACCCACTACAGCTGTTTCAAACATTAATGCTAATAATCAAAATGAATTATTAATGCCTAAAATGGAAAACCAAATTGCAGGACAAAATACAACAAACTTTGTAATGCCTGAAGCAAATGCAAACGGAACCACCCATACCTGTGACATTTGTGGTAAGATGTTTCAATTTCGTTATCAATTGATAGTTCATAGGCGATATCATAATGAAAGAAAACCATTTAACTGTCAAGTATGTGGTCAAGGCTTTCAAACATCACAAGATTTGACCCAACATGGAAAAATTCATGCAAATTGTCCAATGTTCACCTGTAATGTTTGTTTTCATGTTTTTGCTAATGCACCTAGTCTAGAGCGCCATATGAAAAGACACTCAACAgataaacccttcgcatgtaccatttgtcagaagacttttgcacgtaaagaacatttagataatcattttcgaagtcatactggtgaaactccttttagatgccagtattgtgctaaaagttttacaagaaaggagcatatggtcaaccatgtaagaaaacatactggggaaactccccatcgttgcgatatttgtaaaaagttctttacaagaaaagaacattatgttaatcattgcatgtggcatacaggtgaaacaccgcatcaatgtgaactttgtggaaaaaagtatacgagaaaagaacatttagcaaatcatatgagatctcatacaaatgaaacaccatttcgttgtgaaatttgcaaaaaagctttttcaagaaaagaacattttactaaccacattttatggcatactggtgaaacaccccatcgttgtgatttttgtcagaaaacttttactcgaaaagagcacttattaaatcatgttcgacaacatactggtgaatctccgcatcgctgcacttattgtatgaagacttttacacgtaaagaacatttagttaatcatgttcgacaacacactggtgaaactccatttaaatgtacatattgtacaaaagcttttacgcgcaaagatcatatggtaaaccatatcaggcaacatacaggtgagtcgccacataaatgtacatattgtacaaaaacttttaccagaaaagaacatttaacaaatcatgtccgtcaacatacaggagaatcaccccataaatgtacgtattgtaagaagacgtttactagaaaggaacatttgactaatcatgttcggttacatactggtgattcaccacataaatgtgaatattgtcaaaaaacatttacacgtaaagaacacctcaataatcatatgaaacagcattcaagtgataatcctcattgttgtaatgtttgtaataaaccgttcacacgaaaagaacatttgattaatcacatgtctcgatgccatacaggagatcgtccttacgcttgcgaaacttgtggaaaatctttcccacttaaaggaaatctattatttcatcaaagaagtcatactaaaggtcaagatcaagaacgtccctttaaatgtgataaatgcccaaaagattttatttgtaaaggtcatttagtatcacatatgcgatcacattcgggtgaaaagcctcataaatgtaccttatgctcgaaaagttttgttgaaaagggcaacttaaaacgtcatatGAAAATAAATCACCCAAATGCTATTTTAACTCCTCAAGGAATTGTTACTAATATTAAGACCGAAAATGTTATTAACACTACAGCAACAACATCTGCAGCAACAACAACAACGACAAAACCACAATATCTTAATGAAAGAATTCCAGTTTTAAATAAAACCAGTATTTTACCAGTAAATAGTTTAATAAATTCACATACAATGCATACAATTCAACAGATTACATCAAATATTCAAAATGCTAATGGTAATACAAGTAATCAGCAAcaacaagtaattccaatggatacaacaacttcagcacctccatcacataccgttcaacaagaacaaaatcaacaacatttacaaacatcatcacaacaacaacagcagcagcagcagcaacaacagcatcaacaacatcctcaatctcaacaacatcaaactcaattacttcagcattctaaacaacaacaaccattacctcatattcatcaaaatcatcaacaaATCCCACATATTCAACAAAATCGTCATCTTCAATCAACTCAAAATCAAGAAAATGCAAACGATCAACAACAGCAACAACAACAACCTATTGGAATTATACAAACTACTTCTGATAATTCAAATCGTAATCAAATGCAACAAATTCATCATATAGCTGCAAATGAACAAAATCCTGTTGGTTATTAA
Protein Sequence: MNSEHSVEAGTSLEQRQQIQRHSPQHQLSNRHETQPNELGKYWVVTNLVAGSNSNQNNYVSAPVTTTVSTLPPPISSTHSSKPSNIIKTDMIKQEDVRQTPVTSMNNSTNPMQLSNSIMHTSNNSHQLSNGTIITSNNSSQQPQQSQLHHHPVQVQINPEVVIMEHGSVEKSNDGGNGVNKIGDIRSAHNINHSSEQQNLSLERHIPNSIIDSIKQEKMYTNIKPITTGIDTRSQALNIDSKANVQHLLDARNSEGQLIKTQPPDHEIGKQPLGVEMYKVNIEDLSQFLSYHEVFGKIHGDVINHPVPHLSTSHHQTGTSSENNNQNIQQQVLPIPTTAVSNINANNQNELLMPKMENQIAGQNTTNFVMPEANANGTTHTCDICGKMFQFRYQLIVHRRYHNERKPFNCQVCGQGFQTSQDLTQHGKIHANCPMFTCNVCFHVFANAPSLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKSFTRKEHMVNHVRKHTGETPHRCDICKKFFTRKEHYVNHCMWHTGETPHQCELCGKKYTRKEHLANHMRSHTNETPFRCEICKKAFSRKEHFTNHILWHTGETPHRCDFCQKTFTRKEHLLNHVRQHTGESPHRCTYCMKTFTRKEHLVNHVRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTYCTKTFTRKEHLTNHVRQHTGESPHKCTYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMKQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPYACETCGKSFPLKGNLLFHQRSHTKGQDQERPFKCDKCPKDFICKGHLVSHMRSHSGEKPHKCTLCSKSFVEKGNLKRHMKINHPNAILTPQGIVTNIKTENVINTTATTSAATTTTTKPQYLNERIPVLNKTSILPVNSLINSHTMHTIQQITSNIQNANGNTSNQQQQVIPMDTTTSAPPSHTVQQEQNQQHLQTSSQQQQQQQQQQQHQQHPQSQQHQTQLLQHSKQQQPLPHIHQNHQQIPHIQQNRHLQSTQNQENANDQQQQQQQPIGIIQTTSDNSNRNQMQQIHHIAANEQNPVGY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00160970;
90% Identity: -
80% Identity: -