Pnob054621.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352774.1:35062967-35065840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 9.5e-07 0.00015 23.8 2.1 1 23 154 176 154 176 0.99 2 16 0.0017 0.27 13.6 6.3 1 23 184 207 184 207 0.94 3 16 0.0061 1 11.9 0.9 1 23 216 238 216 238 0.97 4 16 7.9e-05 0.013 17.8 2.6 1 23 336 358 336 358 0.97 5 16 9.3e-06 0.0015 20.7 0.2 1 23 365 387 365 387 0.97 6 16 2.2e-07 3.6e-05 25.8 0.5 1 23 404 426 404 426 0.99 7 16 4.7e-05 0.0077 18.5 2.4 1 23 440 462 440 462 0.98 8 16 3.5e-06 0.00058 22.0 0.5 1 23 468 490 468 490 0.98 9 16 3.9e-06 0.00064 21.9 5.5 1 23 496 518 496 518 0.98 10 16 8.6e-07 0.00014 24.0 1.0 1 23 524 546 524 546 0.96 11 16 3.3e-06 0.00054 22.1 0.9 1 23 552 574 552 574 0.99 12 16 0.0001 0.017 17.4 3.2 1 23 580 602 580 602 0.97 13 16 6e-06 0.00099 21.3 6.9 1 23 608 630 608 630 0.99 14 16 4.6e-06 0.00075 21.7 0.8 1 23 636 658 636 658 0.98 15 16 0.00051 0.083 15.3 2.3 1 23 664 686 664 686 0.97 16 16 4.4e-05 0.0072 18.6 0.1 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGGTAGAAATTATGTGCAGAGCTTGTCTGTTATCTGAAGAAACTGAAAATTCATTTAAAAATATTCAAACTTCATATTTTGAAAATAATGAAACAATTGCAATAATATTTAGTAGAATTGGTACAGTTCAATATGATTCTAATGATGGATTACCTCAGAAAATTTGTGAAAAATGCTTAAATGAATTATTAGTTAGTTATGAATTTCAAAAAAAATGCATTAAATCTGATATAGAAATAAGGAAACTTGTTGGAAACCTTTCTGAAGAAAAGAAAAATATAAAAATTGAGACTGGTGACGAATCTGAAATTGAAGCAGAAATAGATGATTGGATTTTATACAGTGATGATGAAAAACCTGAAAATATTTGTGACAATTTAGCAGAAGGAGAAGCAATAATAAAAATAGAAGAATCACAAATAGAAAGACCAAATCCAAAAAATAAAAGAAAAAGTCGTTATAAATGTGAAATTTGTAATAAAATTTTTGATCGAAATTATAGTTATAATCGTCATATTAAATCACATAAACCAGGAGAAATTTTGGATTTTGAATGTCACATATGTAATTGTAAATTTACAAAGGAGAAAAATCTTTTTAAGCATTTAGAGGAAAAGCACCTTCAAACAAATAATGAAGCTTGTTATCCATGTCCACATTGCCCTCGTAAATTTTTAAAAAAAGTTTCCAGAGCTGCTCATATGCAAAGTCATAAAATTCGATCAAATGATAGTGCAAACGAAAATACTACACCCTTTGATAGTAACTCCGAAGATCAAAATAATGCTGAAATTAAAGCACAAATATTTGAAATAAATGTTAAACCATTAGAAATAATTGACAATGCCAATTTAGATAACATAGAAAATACAACACTAGATACTGTCGTAAAAAAAGAGAATGATAGTGATAAAATTTTACTAGCAAGCAAAGAAAATATAAATGTTGACGATGATAGTGATGAAGTAGAACTTCCGAATCCTAAAAATAAACGAAAAGCTATTCATGAATGTGAGGTATGTCTTAAAACTTTTGATAGAAAATATCGTTTACAAAGGCACTTAAATATTCATAATCCTGAAGGTCGACCATTTGAATGTGAAGTTTGTAAATGGCGTTTTGCATCTCAACAAAACTTAACTAGACATGCAATTATGCACACTGCTGTTGCTGATTGTATAAAACAAAATAATGATAAGCCTAAGGTTTACCGATGTCCATATTGTCCTAGAAAATTTGCTAAAAAAGAATCACTGGCTTCGCATATGAGAGTACATAAATCAAATATGCCTCAGTCAGATATACAAGAAAAAAATTTCAAGTGTCAATTTTGTCCAAAAGCTTTTTATAAAATTTCATCACTTACAAGACACTTGTACACACATGACGATGAAAAAGATTTTAAATGTAATTTATGTGATAAAAGTTTTTCACTTCGAGGTCAATTAGTTGACCACATGAATTGGCATAAAGGAATTAAACCATTTTCATGCAAAATATGTACAAAATcattcaatcagtcgtgtaccttaaaagatcatatgcgtactcacagtggtgaaaaaccatatttatgttcagaatgtggtaaaggtttcaataattcatctaatttaagacaacatacattaagacattcaggagataaaccttttaaatgtactgaatgtCCCAGTAGTTTTACATCCAAGGGTGGCCTaaaatctcatatgagtacacatacaaaattaaaacctcatgtttgtgatacttgcgGatcagcgtttacaaaacgatacagtttaaaaaaacacaaacgaattcatactggagaaaaaccttacgaatgttcaacttgtcatatgagatttacatcttctaatcatttgaaacggcacatacgaactcatactggtgaaaaaccatattcttgcaagtactgtgaaagggcttttgcgcaaaGCAATGATCTCGTAAAACATTTGAAATCGCATTTAGGTGATAAAATTTATAAATGTGACAGATGTGGTGAATCATTTAGATTACATACAGAACTACGCGATCATCAATATGAACATTATCGACGAGAAAAAGAATTAAAACAACAAATAGAAAACTTTGATGAAGACACAAAAGGGGTAGGGATTAAAAGTAATGAAAGAATAGATAATGATATTTTATTGAATGAGGCAATTCAATTAAAATCTGAGGTACTGGAACCTGTTGCATATCCAGTTGAATTGGAATATCAATGCGCAGATTGCGAATCAAGTTTTTCGACAGCCGAAAATCTTAATATACATCAAATTAATGAACATGATAAAAATGAAAATTAA
- Protein Sequence
- MVEIMCRACLLSEETENSFKNIQTSYFENNETIAIIFSRIGTVQYDSNDGLPQKICEKCLNELLVSYEFQKKCIKSDIEIRKLVGNLSEEKKNIKIETGDESEIEAEIDDWILYSDDEKPENICDNLAEGEAIIKIEESQIERPNPKNKRKSRYKCEICNKIFDRNYSYNRHIKSHKPGEILDFECHICNCKFTKEKNLFKHLEEKHLQTNNEACYPCPHCPRKFLKKVSRAAHMQSHKIRSNDSANENTTPFDSNSEDQNNAEIKAQIFEINVKPLEIIDNANLDNIENTTLDTVVKKENDSDKILLASKENINVDDDSDEVELPNPKNKRKAIHECEVCLKTFDRKYRLQRHLNIHNPEGRPFECEVCKWRFASQQNLTRHAIMHTAVADCIKQNNDKPKVYRCPYCPRKFAKKESLASHMRVHKSNMPQSDIQEKNFKCQFCPKAFYKISSLTRHLYTHDDEKDFKCNLCDKSFSLRGQLVDHMNWHKGIKPFSCKICTKSFNQSCTLKDHMRTHSGEKPYLCSECGKGFNNSSNLRQHTLRHSGDKPFKCTECPSSFTSKGGLKSHMSTHTKLKPHVCDTCGSAFTKRYSLKKHKRIHTGEKPYECSTCHMRFTSSNHLKRHIRTHTGEKPYSCKYCERAFAQSNDLVKHLKSHLGDKIYKCDRCGESFRLHTELRDHQYEHYRREKELKQQIENFDEDTKGVGIKSNERIDNDILLNEAIQLKSEVLEPVAYPVELEYQCADCESSFSTAENLNIHQINEHDKNEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -