Pnob008289.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352772.1:111580821-111591498[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-08 2.5e-05 25.8 0.1 5 39 12 46 10 52 0.85 2 2 9.3 9.8e+03 -1.7 0.1 16 25 314 323 313 323 0.86
Sequence Information
- Coding Sequence
- ATGCCACCCAAACGAAAATATAACATCAGCGATATTGAATTGGCTTTGAATGAAATCCATTCAAAAGTTTCGTCAATACATGCAGCTGCTAGAAAGTACAATATACCACGCCCTACATTACAAAATAGAATTCATCAGCGGTCTCGAAGATCTAGAACTGGTCCTGATACAGTTTTGAATCCCATAGAAGAGAAAAATATTGTAAATTGGATCTTTGAAAATCACAAAAGAGGATTTCCTAGAAGGAAGCACGAAGTATGTGGAGTAGTTAAGGAGTTCTTGGATAGTTCTCAACGAAAAACAATCTTTAATGCGGTTTTAAATAAAAATAATGATGATATTGAGAAAGATATTTCTGATATTTTAAACGAAAATAATAATTCAAATGTTAATATAGAGCTTACCGATTTGCAAATTGGACAAAATATTATTATTTCGCAAGCCGAGGAAGTTAATTATTTTGATTCTGACATGCACTGTACCCCCCTCAAAGTTTTTGACATTAATAAAATTCCAATTTTAATAGAAGAAAATGAAAAACAGAATAATTCTTCAAATAGTATAGTAACTTATCTCAAAATTGCTAAAACGCCAGCTAGAAAGGGAGTAAAAAATGTTGAACGCAAAAGTTTCATAATTTCATCTACTCCTTATCAAAAGGCAATTATGTTAAAGAATGACAACAAAATGATATTTGAAAAACAGAAAGAACAACGAAAAATTGAAAGAATGGAAAAGAAAAAACTGAAAGAACAAGAATTGAAAGAAAATCTGAAACACAAGACCAAAAAATCTTCTAATCTCCATCAAAAAAATACAAAAAGACCAAAAAATCTTCAAATCTTGAAATCTAAGGGGAATCCAAAAATTAAAGCTGATAACGTAAAGAGTAATAAACCGTTAGTTGAGAAAAACAAACTTGTTAATACTTTTGATGATAAAACCAGTCAATCAAAACTAGCATCAAAGCAAAGGGGCTTAAATTACAAGGAGCCTCATGTTCGAAACCTCTTTACGCCAACTTTACTTGAGCAAATTGATAATGATACTGTAAACCTAGATATTATTGTAGCCGGATTAGAAGTTCTATGGCAACTACCCGAACCTGTCATATCATCACAACCAAATTTTACAGAAGTTGTTGCCATAAAATTTGATCATCATTTGCAAGATTGCAGTCGCTTGCAGATTCCTAGCTTCAATAGACACATTGAAGACACATCTAATTCAAAAAATTGTGATGATGTAACATTTAAAAAAGTGTCAGAAGCTAACCGGAACGATTTAGATCGAATATCGCAAGCTTTTGATGAAGATAGTTTCTATATAAAAGTTGATCATAGTTGTAATGTAAAAACATTATTAACAGAACTATTTCAACAGAAAAAAAATATAAAAAATTTTAAAACAAAATTACTCGAACAATTCAAATTAGCTGTTGCTAATAATAAAGATGAATTGAATGGAATGGTGATGATTTAA
- Protein Sequence
- MPPKRKYNISDIELALNEIHSKVSSIHAAARKYNIPRPTLQNRIHQRSRRSRTGPDTVLNPIEEKNIVNWIFENHKRGFPRRKHEVCGVVKEFLDSSQRKTIFNAVLNKNNDDIEKDISDILNENNNSNVNIELTDLQIGQNIIISQAEEVNYFDSDMHCTPLKVFDINKIPILIEENEKQNNSSNSIVTYLKIAKTPARKGVKNVERKSFIISSTPYQKAIMLKNDNKMIFEKQKEQRKIERMEKKKLKEQELKENLKHKTKKSSNLHQKNTKRPKNLQILKSKGNPKIKADNVKSNKPLVEKNKLVNTFDDKTSQSKLASKQRGLNYKEPHVRNLFTPTLLEQIDNDTVNLDIIVAGLEVLWQLPEPVISSQPNFTEVVAIKFDHHLQDCSRLQIPSFNRHIEDTSNSKNCDDVTFKKVSEANRNDLDRISQAFDEDSFYIKVDHSCNVKTLLTELFQQKKNIKNFKTKLLEQFKLAVANNKDELNGMVMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -