Pnob067070.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352774.1:229587759-229588109[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-08 1.2e-05 26.8 0.0 2 43 6 47 5 49 0.92 2 2 7.5 7.8e+03 -1.4 0.0 17 22 91 96 89 98 0.86
Sequence Information
- Coding Sequence
- ATGCCAAAATATAGTCAAGAAGATTTAGAACAGGCACTTTTAGAAATACGGCAAAATAAAATGCCGATTAGATTAGCTAGTCGACGTTTTAAAATTCCTAGAGGAACGTTGCAAGATCGTATTCAAGGTAGGGTTCGCGTAAGTTTGAATAAAAAAGGACCGGATACCGTTCTCACTGGGAAAAAAGGAAAGGAAATTGCTAAATGGCTAACCCATATAGCGAAATGCGGATTTCCTCGGTATCGGGGATTTATGAAACACCATTCAGAGTTATCTATAAGGCAAGCGGAACACATTTCGAAAGGTCGAGCTATTACAACAGAAAATTTAATTAAACAAGGTAGAATGTAA
- Protein Sequence
- MPKYSQEDLEQALLEIRQNKMPIRLASRRFKIPRGTLQDRIQGRVRVSLNKKGPDTVLTGKKGKEIAKWLTHIAKCGFPRYRGFMKHHSELSIRQAEHISKGRAITTENLIKQGRM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -