Pnob020351.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352772.1:186037670-186039323[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 1.4e-05 26.5 0.0 3 43 11 52 9 54 0.93 2 2 4.8 5e+03 -0.8 0.0 25 34 85 94 84 102 0.83
Sequence Information
- Coding Sequence
- ATGTCAAAAAGAGAAATGAAATACAACGCCGAAATTTTAAAAGAAGCACTTGAAGGAATTAAATCTGGTAATCTTAAAATCAGGGAGGCCAGTAGGCTTTTCAGTATTACAAGATCAACATTGCAGGACAAGTTGAAAGGTAGACGTCCAGAAACCTTGCAACGACCTGGCTCTCCCACTGTCTTGTCAACTGAAGAAGAGAAGAAAATTGTCCAATGGTTAGATTTACAACGAAGTTTTCACGAAAAATCGCAATATGACATTGCCAAAAGTGTTATTAGATTAGTGCAAAAATATCTCGAAGAACAAGGGCAAGACGTAGATAAAATAATAACTGCGATAGAACAATATGAAGAGTATTTGGATGAAAATATTACTTTAACCCAAAATTTAGTTAACGTCTCAACCATAGATAATGTAGAGAGTTCAGAAAACGAATTGGCTTCTTTGCATTCTGAGCAGGATAACACCTTAACGAATAGTTTAGCTAACATATTTTGTGATTTTCAACTAACAGATGGAATTTATGAACTTGTAGATGGTAGCATTGTTAGAGCCATTGAAAATGAAAATAATAAAAATGAAACGCCTTTGTTAAAAGCATTTGATCAAGAACTAAGAAGTAAATCGTGCACTCCTACTGGATTAAGTAGATCACCTTCTTTTGCTTCAAGAGGATCAACAATAGATAAATTTTTAACAACTCCACGTGCTGATACGGTTACAAATGCTTTATGA
- Protein Sequence
- MSKREMKYNAEILKEALEGIKSGNLKIREASRLFSITRSTLQDKLKGRRPETLQRPGSPTVLSTEEEKKIVQWLDLQRSFHEKSQYDIAKSVIRLVQKYLEEQGQDVDKIITAIEQYEEYLDENITLTQNLVNVSTIDNVESSENELASLHSEQDNTLTNSLANIFCDFQLTDGIYELVDGSIVRAIENENNKNETPLLKAFDQELRSKSCTPTGLSRSPSFASRGSTIDKFLTTPRADTVTNAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -