Pnob040237.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- bab1_2
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:22290931-22293845[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-12 2.1e-09 38.8 0.0 3 44 522 563 520 564 0.92 2 2 1.8 1.9e+03 0.6 0.8 4 20 681 696 680 696 0.91
Sequence Information
- Coding Sequence
- ATGGGCAGCAGTGAAGGACAAACGTATTGCCTTCGATGGAACAATCATAAATCAAATTTGGTTGAAATTCTTGATGCCCTTATCAAAATGGAATCATATGTTGATTGTACCATTGTTGTTGATGAACAAATACAATTTAAAGCTCATCGTGTTGTATTAGCAGCAAATTCACCATACTTTCAATCAATTTTACAGGATGTCCCAATGGATCATTGTAGTATTTTATTTCCAGGTGTACAAGCATTTGAAATGCGTGCTCTACTTGAGTATATGTATACTGGTGAAGTAAATGTAACACAAAGTCAAATTCCTCGAATTATGAAAATTGCTGAACAACTTGAAGTTAAAGGACTGTTTGATATGACTGATTTGAAAGAAAAATTTACAAAATTTGAAGATAACGGTCCATCAAATTATTCATCATATCCACCTCCTTTTCAGCCACCAGCACCTCCTCAGCTAAGTGGAGTAGCAGCTATTGCTGCAGCTGCACTTACACCACCAACATTTAGAGAAAGTTCAAAAGACATTAATAGAGATTTAAATGAAAGAGACAGTCATCATCATTATTCTTCATCTCACCAACATCAAACACATCATCGTTCATCAACATCATCACTAAACTTAGAACGAAGTACTAATGAAAGACGTCTCAGTAGCACTGAGAGACGTTTAAGTATTGATAGAGAGAGAGAATATAGGGATCGAAGTGGACATCGGTCATTATCATCATCAGCTACATTATCTGATCTCCATCATCAAACACAACAGCAACAACAGCAATCTTCTCCTATTATATCAACATCTTCAAATATTACACAACATCAAGCACCAAGTAGTAGTTCACCTTCACCATCATATTTATATAAATCACCATATTCTAGTCTGTATTCAAAAAGTCCAGTTCCATCCGAAAACAGACGCAGCACTGAAGATCGTAATGATCGTTTTAATTCATCAAGTGATAGACATGAAAGACAAGAACGTGCATTACACAATGAACGAAGTAATGAAAGACTTCACGATCGACATTTATCATCACAACAGCAACAAGGACAAATGACACCACCGCCACCACCACCTCCTCCCCCATCTGCCACAACACAACAACATACACCATGGCCAGTTATTCCCCCCGGATCAATTCCAACAACAGCAGCTGCTGCAGCAATGTTAAGCTCTGTTTATGAAAACGCGTCTGATATGAATCCTTTAAAACGCAAAAAGCTTTCATCGATCTCAAGTATGTTAATGGGAAGTGATACACCAATTTTGAGAAACGTTTTGGCGCAAAGTCACGCCGCTGATTCATCTCAACCTATGCCGTTAGTTAAACAGGAGAGAGAAAATGAGAAACAAGCATCACTTAACTGTTCTGGACCTTCAGACTACAATAATGATAAGTATGGAAAATATGATGAACCACATTCACCATTCATTGATAAATCGTTTGACGATGAAGGTTTGGACTGCTCTCCAAATGAACGCCTAGGAAATCTTTCATATTCTTCAAATAATAATTCTCAAAAGCCAGAATGGAAACGATACAAGCAATATACTAGAAGTGATATTTTGGCTGCCATTGAATGTGTTCGTAACGGAATGAGTGCACTTCAAGCTTCACGTAAATTTGGTGTACCATCTCGAACCCTTTATGATAAAGTGAAAAAATTAGGTATTACAACAAACCGTCCTATGAACCGTACCTTAAAACGAAGTCCAAGTACTGGCAGCAGTTCAGCAAGTTTCCCATTTGGTTTAAGCGGAACTACACATCCCGCTTATAGTCAAGCAGAAGCAATGCTTTCACAAATTCATGAATCTAATGATTATAAAATGCAAAATACAAGTCATTTACGAAGTCACAACAGTAGTAGCAATGGTAATGGTAATGTTGATAAAGATCATCGTAGCGAACATCATTTACCCCCAAATTTATCTCACCCAGCTGCAGCCGCCCTACTTGATCCAGCATTTTTACAACAAGCCTTTGAATCACGTGGTGGTGACATTGCTGGACGTGAAGCTTTACATGCAATGGCACTTGCAGCTGCAGCACATGCTGCTGTAAACGGTATTTCTACAAGTCCAGGTACAAATGGAACTGCAAGATCTCCAAGTCCTGGATTTGCTCTCAAATATTCAAGATCTCATCAAGATTCTCCGCCGCCAACTTCTACTACTTCAAATATAAATTTGAATAGAACATTATCATCAACATCCCAACAACATCAATTAACATCAGAACAACAACAAGATTTAGCAGAACAACATGCACCCGAAAGAGATATAGACTGTATGAAATATGAACTTGAACATCCAGATGATGATGATGATGATGATAATGAAGACTCAAGATCATCACCACATGACAGAAATCTAAGAGAAGAAAATGATGTTGTATCAGAATGTAGAGAACAAGAATTACTGGAGCGTGGTATTAGAAATAGACTAAGTAGAAAACGTAATTTAATTAAAATGGAACATGAACAAGATCGAGTTGAAGATTTATCTGTTAATCGAAAAGAATCTACAGTACAACAAGAAATGCATTCACCATCATCACAGCCTTTATCACCGTCATCATCATCTCAACAACATTTATCACTTTCTAAAAATGATACAAATAATCATCACAATACAAATTCATCATACAGCAATAATTCTGGTAATCAACAATCTAGTGGTGTTATAATGCCACCTGTTATTACAAAATTATCTACAACAACAAATTCCATTCCGGCAACATCTGATTATCCAGTTAGTTTAGAATCATCACAAAAAAGAGAATTATTAACAGATGAAACTGGAGACTAG
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDEQIQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMTDLKEKFTKFEDNGPSNYSSYPPPFQPPAPPQLSGVAAIAAAALTPPTFRESSKDINRDLNERDSHHHYSSSHQHQTHHRSSTSSLNLERSTNERRLSSTERRLSIDREREYRDRSGHRSLSSSATLSDLHHQTQQQQQQSSPIISTSSNITQHQAPSSSSPSPSYLYKSPYSSLYSKSPVPSENRRSTEDRNDRFNSSSDRHERQERALHNERSNERLHDRHLSSQQQQGQMTPPPPPPPPPSATTQQHTPWPVIPPGSIPTTAAAAAMLSSVYENASDMNPLKRKKLSSISSMLMGSDTPILRNVLAQSHAADSSQPMPLVKQERENEKQASLNCSGPSDYNNDKYGKYDEPHSPFIDKSFDDEGLDCSPNERLGNLSYSSNNNSQKPEWKRYKQYTRSDILAAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTNRPMNRTLKRSPSTGSSSASFPFGLSGTTHPAYSQAEAMLSQIHESNDYKMQNTSHLRSHNSSSNGNGNVDKDHRSEHHLPPNLSHPAAAALLDPAFLQQAFESRGGDIAGREALHAMALAAAAHAAVNGISTSPGTNGTARSPSPGFALKYSRSHQDSPPPTSTTSNINLNRTLSSTSQQHQLTSEQQQDLAEQHAPERDIDCMKYELEHPDDDDDDDNEDSRSSPHDRNLREENDVVSECREQELLERGIRNRLSRKRNLIKMEHEQDRVEDLSVNRKESTVQQEMHSPSSQPLSPSSSSQQHLSLSKNDTNNHHNTNSSYSNNSGNQQSSGVIMPPVITKLSTTTNSIPATSDYPVSLESSQKRELLTDETGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01224713;
- 90% Identity
- iTF_01224713;
- 80% Identity
- iTF_01224713;