Pnob057510.2
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- bab1
- Assembly
- GCA_947095535.1
- Location
- OX352774.1:123107738-123109866[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-17 7e-14 53.2 0.0 1 43 45 88 45 90 0.95 2 2 1.8 1.9e+03 0.5 2.0 2 26 178 205 177 205 0.84
Sequence Information
- Coding Sequence
- ATGGCAATGTCATATAATTCAACAGATAGCTATCAATATCAATTACAATCAATGTGGCAAAAATGTTGGAACACAAATCAAAATTTAATGCATCATTTACGATTTCGAGAACGTGGCCCGTTAAAATCATGGAGACCAGAAACAATGGCTGAAGCCATATTCAGTGTGTTGAAAGAAGGTTTATCGTTATCACAAGCTGCCAGAAAATATGACATTCCATATCCAACTTTTGTCTTATACGCAAATCGCGTCCATAATATGCTAGGGCCATCAATAGATGGTGGAACTGATTTAAGACCAAAAGGCCGTGGACGACCTCAAAGAATACTATTAGGTATATGGCCAGATGAACACATTAAAGGTGTAATAAAAACAGTTGTTTTTCGTGATGCAAAAGAGTTGAAAGAAGAGACAATGCATTTACAGTATGGTAGGCATTCGCCTGTATTTCCATTCCAAGAAGGGCCTCTAAGTTATCCTGGTGGACCATGCGCAAATGGTATGCCACCGCAGGGATCTGAATCAATGAGCCCAGAAGCAACAGCTGCTGCAGTAGCTGCTGTTGCACACAATTTACGACAACAAATGCAAATAGCCGCTGCTGCACAACATCATCCGGATTCACCGGGGAATATATTTAATCTTCCAACACATTTGCAAGTTAATCATCCGGCAGTATCCGGCTCAGGTACTACATTACCAAAATCAAATTCTCCAGCCACAAGCAATGAACgcaataatagcagggaaagtaacaatagcaataataatggaagtaacagtaataataataattgcagtgggaataCACCTGGTCTTCATAATTCAAATTCATCGTCACAAAGACATTCATCTCATCAACAAATACTTCCAAATCCAAACGCACTAGCTGGTTTTGCCGGTATTCCAGGATTACATATGATTTCTGGTTTAAGTAGTTCACAAATTAATCGTGATTCAAATATAGATAGTAACAATGGACGTGGTAATAATGGCAGTGTTAGTGGTAATAGTCATTCAATTAGTATTTTTTCAAATTCCGGTTCTGGCAATAATGATAATTCAAACGGTAATGGTAATTCAACAAAAAATTCAAATCAACATCAATCTGACATACCTAGCCATCATCATCATAAAGATATTCCAAGAAATGATTCACCAATGGAATTAGCACATGACTTACGTATGAGTAGCCCAGATAATAGTCCATTAAATTCGCATTTACAAATGGCATTAGAACCTACAGTAAATTTATCAGTTGGTGCAGGTGGTTTAGCATATAAATCATCAAGAACATTTTCGTCATCGCCACATTCTGACCATCATTTATTTCAAGATGAAATCGCTGATTTAGTTGCAGCTGGTAATAATAGTAATAGTACTGGCCGTAATTGTCCACCGAATTTTAAGGAGCCTTCTCCAAATATCAAAATTGAACCAATGACTGAATGTCGCAGTGAATAA
- Protein Sequence
- MAMSYNSTDSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKELKEETMHLQYGRHSPVFPFQEGPLSYPGGPCANGMPPQGSESMSPEATAAAVAAVAHNLRQQMQIAAAAQHHPDSPGNIFNLPTHLQVNHPAVSGSGTTLPKSNSPATSNERNNSRESNNSNNNGSNSNNNNCSGNTPGLHNSNSSSQRHSSHQQILPNPNALAGFAGIPGLHMISGLSSSQINRDSNIDSNNGRGNNGSVSGNSHSISIFSNSGSGNNDNSNGNGNSTKNSNQHQSDIPSHHHHKDIPRNDSPMELAHDLRMSSPDNSPLNSHLQMALEPTVNLSVGAGGLAYKSSRTFSSSPHSDHHLFQDEIADLVAAGNNSNSTGRNCPPNFKEPSPNIKIEPMTECRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00363172;
- 90% Identity
- -
- 80% Identity
- -