Pnob051068.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:197629296-197630636[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-09 1.5e-06 29.7 0.0 5 39 270 304 269 310 0.83 2 3 6.9 7.2e+03 -1.3 0.1 28 36 347 356 346 360 0.76 3 3 3.3e-09 3.5e-06 28.5 0.0 4 39 385 419 384 423 0.91
Sequence Information
- Coding Sequence
- ATGGATAAATATAGTTCAGAAGGAGATCATTTGAATAGTATTTTGGCTATGCAAAGAAATATTCTGCAAAATAATATATTTCCAGATGTTAAAATAGTATTCGCTGGAGGCGACTACCTTTTTGCACATCGAGCGATATTAGCAATGAATAGTGATTTCTTTGAAAAATGTCTTAAAAGTATTCCTGTTACTCCAGATTCTTTAACTATTTTAATTATACCAGATTTGAACAAAAATATGATGAAAAAAATTTTGGAACTTTTATATGTGGGTGAAGTAGTTTTGGAATCATGTGAATTAACCGATTTTTTTGAAAATAAAAATTTTTTTGGCATTAAATCTGATTCATTTGACTGCATAATTAAAAATGAAACCATTAAAAAGCGTAAATTATCTGAAAATATTAATAAATTAAAAAACTTTAATAATTCTGACCAAGAATCATATGATGAAATTACAACAGAAAAAGAAATTGTTAAAAATAAACATATTGGTGAAACTTCAAAAAACGATAAAACAAATAAAATTATAACATATAAATTTTCAAAAATTGATTCAATACAACCGGAGGAGGATTCAATAACCACCTCAACATATAATTTAGAAGCTAGTGAATTATCAGAAGAAGAAAATATTCAAAATAAATCTCTCGATTGTTATGGTTATACTTATACTCTTAAAAATCCTAAATGTGTAATACCTGAAGAAATTGAAATAGATGAAATTAGTTACGATAACAATGAATATCAAGATTTAACAACATCTTTTTATTATGAAGAACAAAATCCTGTAGAACGAAGTTTTGCTATAGAACAAGCAGCAAAGAATATTCTTGAACAAGGTACTAGTGTTACAAAAGCTGCAAAAATATATAATATTCCGAAAACTGCATTGTGGCATATGGTAAAACATGATCCAAGATATAAGAACAACGTAAAACATTCATTTGAAGGAAGAGTAAAAGTTGAAATTATATCTGAATTATGTGAACGACTGAAAAAAAGGGAACGCCTTCAATGTATTAGCAATTCATTAAAAATCCCAATTTCCACATTGCATTGGTATAAAGTTCGTTTAATAAAGGCTGGTTTACTTCCAGAACCATTTCAACATATTAAAACGACATTAAGATCTGATCAAAGATTGAAAAGAAATTTAGAAAAAGCAATTGAAGCTTGTAAAATGGGTATGATCCAAAATAAGGCCGCTAAAAAATTTGGTGTTTCAAAAGCGACTTTGTTCCGTCGTATGAAAAAGATAAATAAAGAAGAATAA
- Protein Sequence
- MDKYSSEGDHLNSILAMQRNILQNNIFPDVKIVFAGGDYLFAHRAILAMNSDFFEKCLKSIPVTPDSLTILIIPDLNKNMMKKILELLYVGEVVLESCELTDFFENKNFFGIKSDSFDCIIKNETIKKRKLSENINKLKNFNNSDQESYDEITTEKEIVKNKHIGETSKNDKTNKIITYKFSKIDSIQPEEDSITTSTYNLEASELSEEENIQNKSLDCYGYTYTLKNPKCVIPEEIEIDEISYDNNEYQDLTTSFYYEEQNPVERSFAIEQAAKNILEQGTSVTKAAKIYNIPKTALWHMVKHDPRYKNNVKHSFEGRVKVEIISELCERLKKRERLQCISNSLKIPISTLHWYKVRLIKAGLLPEPFQHIKTTLRSDQRLKRNLEKAIEACKMGMIQNKAAKKFGVSKATLFRRMKKINKEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01224751;
- 90% Identity
- iTF_01224751;
- 80% Identity
- iTF_01224751;