Pnob051069.1
Basic Information
- Insect
- Poecilobothrus nobilitatus
- Gene Symbol
- -
- Assembly
- GCA_947095535.1
- Location
- OX352773.1:197631088-197632744[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3e-13 8.7e-10 40.1 0.0 4 44 323 363 320 364 0.92 2 3 0.37 3.8e+02 2.8 0.0 28 37 393 402 392 407 0.89 3 3 2e-15 2.1e-12 48.4 0.0 5 43 433 470 432 472 0.93
Sequence Information
- Coding Sequence
- ATGGAAAATAATTTGAAATGGATGGGGCATACATCAACGATATTTGAGATGCAAAAGAAAATATTAAAAGAAGGAACTTATTTTGATGTTAAACTGGTTTTTACCAATGGAGAAATTTTGTTTGCTCATAAAGCAATTCTAACATCATATAGTGATTTCTTCAAGGAATGTTTGAAAAATATACCTGAAACAATAGATCTAGAGACCGTTATTATAATACCGGACATTAAAAGAAACATAATGCAAAAAATTTTAGAATTTGTTTATTTAGGTGAAGTTACATTAAGTTCATCAGATTTGACAGAGTTTTTAGAAAGTAATACATTTTTGGGTATAAAAAATTCAATTAGTTTTGAGTGTGCTTTTCAAAATACTAGTACTAGTATAAATGATAATAAAATAGAAGAAATAATGGAAATATCACATCCTATTGAAAACCCAAGTAATGTAATAGTTAACGAACAAATAAATGAAATCGATGAATGTGATCAACAAGATAAACAACTCAGTGTACAACAAAAGGAAATAGAAGAACAACCTAAAAATAATCAAATTCATATGAAAATAAATTTAGAGGATGAAGTTAATCCAAGTCATCAAAATCAAATTTCTACTTTTGATGAATTTGAACAGGTTAATGTAAATGGTGAACAAGAAGGGGAATATATTATAGCAGATAATGTTGAACATTATCCCAAATCGTATACCTTAAAAGAGGAAAAACTTTCATCAGGTCTTATTAAAATAGAAGTTTCATCAATGCCAGTTGCTTCCACTTCAAATGATAATCCATCTGATGAAACAACAATATATAAAATTACAGAAGAAGACAATGGTGAAGCTGTTGAAGAATCATCCGCGTCGCAAACAGAGTATAAAATATACAGTATTGAAGCTACTTCTGGCAATTCGAATACATCGAAAGCACAATATATTGGGCACAAAGTTTATACAGAACGCGAACATAATATAACAATGGCTATTAAAGATGTTTTAGAAGAAAGTTTAAGTTTATCAAAAGCTGCAACTAAATATAATATTTCCAAAACAGTTTTATGGCGAAGAATAAAAAATGATCCAATGTATAAACATAGTCGGCATAATCCAGTGTTATCATTAGCTTGTGAAAGATTAGGAAGAGGTGAAACTCTAAAAAGTATTAGCCAATCTTTAAAAATTCCAATGTCTACTTTACATAGACACAAAGTAAGATTATTAGAACAAGGATTTTTACCAGATACAGTAACACAAGTAAAAAGACGATTAGAAGAAGATAAAATTAATTTAAAATTTAAATTAGAACAAGCAATAAAAGCATGCCAAATGGGTATGTCACAAAATAAAGCAGCACAAGATTTTGGTGTTTCAAAATCAACATTATGGAGACATTTTAAACGTTCTGAAGCATCACAATTATTAGGTAGTGATCAATCTAGTGATATCAAAAAATTTGATCCATTAGAATACAGTACAATAGAATATACTATTGAAGATCAAGATGTTGATCAAGATCAAGAAATTGTTGAAGAAGAACAGGAGTATTCAATATCAGAATTTGAAGATGATGAAAATAAATTTCGATCTATAATATCTTAA
- Protein Sequence
- MENNLKWMGHTSTIFEMQKKILKEGTYFDVKLVFTNGEILFAHKAILTSYSDFFKECLKNIPETIDLETVIIIPDIKRNIMQKILEFVYLGEVTLSSSDLTEFLESNTFLGIKNSISFECAFQNTSTSINDNKIEEIMEISHPIENPSNVIVNEQINEIDECDQQDKQLSVQQKEIEEQPKNNQIHMKINLEDEVNPSHQNQISTFDEFEQVNVNGEQEGEYIIADNVEHYPKSYTLKEEKLSSGLIKIEVSSMPVASTSNDNPSDETTIYKITEEDNGEAVEESSASQTEYKIYSIEATSGNSNTSKAQYIGHKVYTEREHNITMAIKDVLEESLSLSKAATKYNISKTVLWRRIKNDPMYKHSRHNPVLSLACERLGRGETLKSISQSLKIPMSTLHRHKVRLLEQGFLPDTVTQVKRRLEEDKINLKFKLEQAIKACQMGMSQNKAAQDFGVSKSTLWRHFKRSEASQLLGSDQSSDIKKFDPLEYSTIEYTIEDQDVDQDQEIVEEEQEYSISEFEDDENKFRSIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01224734;
- 90% Identity
- iTF_01224734;
- 80% Identity
- iTF_01224734;