Pper021271.2
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- topi
- Assembly
- GCA_963082735.1
- Location
- OY720429.1:261112757-261117554[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.2 5.4e+02 3.0 1.3 2 20 151 168 150 170 0.92 2 10 3.9e-05 0.0096 18.0 2.9 1 23 236 258 236 258 0.97 3 10 0.41 1e+02 5.3 0.5 2 11 286 295 285 307 0.77 4 10 3.6 9e+02 2.3 0.0 2 19 362 379 361 381 0.89 5 10 0.01 2.6 10.3 0.1 2 21 467 486 466 489 0.86 6 10 4.7e-07 0.00012 24.0 2.0 1 23 504 526 504 526 0.95 7 10 0.002 0.5 12.6 0.9 1 23 532 557 532 557 0.95 8 10 0.42 1e+02 5.3 1.6 1 23 563 585 563 585 0.88 9 10 6e-07 0.00015 23.7 0.2 3 23 593 613 591 613 0.98 10 10 0.0073 1.8 10.8 1.2 3 23 621 642 619 642 0.95
Sequence Information
- Coding Sequence
- ATGAATTGCGGTAATCTGTGTGATGAAGAATACACCAATTCAGAAGCATGGCTGGctgaacaaatattttcccAACTGAAAGACTTTAATACGGAACCTCCGAAGGACGAGGAAATTAGTAAATTGAGCACTGATACAGAACCAGATTCACACGAAGTCGATGGAACAATTAGCTCAGATGTTCTCGATTTAGGTGCAATCCAAGTTAGCGAGCAGGTCGACAAAGAACCACAGCAAGAGAAGGAAAACCTCTGCCCAAATTTAGAAGAACAATTGAATGTCCCAGAAAAACATGACACGGAAGTGGCTCAGCAAATACACCAAGATCAACAATTGTTTcaatattttggtgaaatttcaaAAGTTCTCACAAATGCTCAGCAGTTTCACACATTCTCTTCCTCAGATCCTTCGTTGTTCTTCCCGCAAAACAATTTACAAGTTATCGTCGAATGTGCCAATTGCAACTGCATCTTCGATGCCGATTCGTTCCGCCAACATGTGTGCGATTATGGCGAAGATAATAACTTGATTATTCCTGAACCAATGGAACAGTCATTGACGTCCTGCCATGCGGGACCAGTTGAACCGGCGTGCATGCGACTGTTACGCGAAAACCAAATTCGCATTCGTCGATTCCTCAAGGACGAACTGAAGTACGATTTGAATTCTGGAAATTCAAACACGAAAAAGCAAGATGGCCCACATGAATGCACCCTGTGCGAGAGAAAGTTTGTCCACGCATCGGGGTTGTCGCGTCACATGGAGAAACACGCGCTGGATTTGATACCCACCACGACTTCGGCCAATACGAGCAATGGCTGTCCGTCGATTACCAGTCTGAAGGTGGTTATCAAATGCACCATTTGTGGGCGCATATTTTTCGAAACGAAAACTGCTTTTGAACATTTTGGTGAGCATTTCCCCGGTAAGCCTGAGGACGAACAGGAATTTGGAGAGACGGGTGAGTTTCCATATGAGAACTACCTCGATGACgccttaaatttcctaaaatctGAATCCAAAAAGCCCGACAACGAACCCACCTCCTACTTCAAGATGGTAATTTTAAGTTGTGTCTTGCAGTGTGAGTTTTGTGACCTACTATTTTCTGAGGTTCCTTATTTGCTCGCCCACTCGGCATGCCATCAACCACAGAGACCTTTCGAGTGTCGTGCATGCGAGATTCGTGTTTTTACGTCGAAGGAGATCTTTATGCACTGGCAGGCCGAGTGTGTCTTTGCTAGGGAGAATATGAAACGCGGTTGCTCGTTGCAGAGGTTTTACGTGTGCAATGTCTGTGAGAATAAGCACGGTTCGTTGGAACAATTGCATGAACACAGGTACTCTTCTAATCACTTTTTTCCGAGGCTGGATAAAAAAGGAGTGCTGCTGCTACCTTGCGAGTACTGTGATCGAGTGTTTGAAACGGCGAAAGATATTGCTTATCACTATGGGGAGAGGCACTATAAGAAGACCAAGCGGGATCCAACGGCAAAGTACCGCCAGTACTTGTGCGATATTTGTGGAAAGACCTACACGCAGTCGAGTCATTTGTGGCAGCATTTAAGGTTTCACAAAGgTGTCAAGCCATTCGCCTGCAAAGAACCAGGCTGCTCACGTCGATTCACCATTCGTCCTGATCTAAATGATCACATCCGTAAGTGTCACACTGGGGAGCGACCATATCATTGCCTGATCTGCGGCAGACGCTTTCTAACCGGATCAGTGTTCTATCAACATCGTCTTATTCATCGTGGTGAACGTCGCTATGGATGCGATGAGTGCGGCAAACGATTCTATCGTGCAGATGCTTTGAAAAACCACCTTCGCATTCACACTGGGGAAAAACCCTACGGGTGCTTGTtctgcacgaaaagtttccgcCAACGAGGAGATCGTGATAAACACATCCGAGCAAGACACTCCAGCTTGGACGCAAATGCTCGTCTTATGATGCAAATGCGTAAGTTGCAATTGGAGGCAGCTGCCAGGGCTACTGCCTCGTCGACACCAGCCGAAGATGTAGTGATGGTGGGAAATATCCCATTTCCGAAGAGCATGTTCCAACCTATGCTTCCGGACATTGATGCAGGCCAAGATTGCAGTGCAATAAATtaa
- Protein Sequence
- MNCGNLCDEEYTNSEAWLAEQIFSQLKDFNTEPPKDEEISKLSTDTEPDSHEVDGTISSDVLDLGAIQVSEQVDKEPQQEKENLCPNLEEQLNVPEKHDTEVAQQIHQDQQLFQYFGEISKVLTNAQQFHTFSSSDPSLFFPQNNLQVIVECANCNCIFDADSFRQHVCDYGEDNNLIIPEPMEQSLTSCHAGPVEPACMRLLRENQIRIRRFLKDELKYDLNSGNSNTKKQDGPHECTLCERKFVHASGLSRHMEKHALDLIPTTTSANTSNGCPSITSLKVVIKCTICGRIFFETKTAFEHFGEHFPGKPEDEQEFGETGEFPYENYLDDALNFLKSESKKPDNEPTSYFKMVILSCVLQCEFCDLLFSEVPYLLAHSACHQPQRPFECRACEIRVFTSKEIFMHWQAECVFARENMKRGCSLQRFYVCNVCENKHGSLEQLHEHRYSSNHFFPRLDKKGVLLLPCEYCDRVFETAKDIAYHYGERHYKKTKRDPTAKYRQYLCDICGKTYTQSSHLWQHLRFHKGVKPFACKEPGCSRRFTIRPDLNDHIRKCHTGERPYHCLICGRRFLTGSVFYQHRLIHRGERRYGCDECGKRFYRADALKNHLRIHTGEKPYGCLFCTKSFRQRGDRDKHIRARHSSLDANARLMMQMRKLQLEAAARATASSTPAEDVVMVGNIPFPKSMFQPMLPDIDAGQDCSAIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00992100;
- 90% Identity
- -
- 80% Identity
- -