Pper022796.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- Znf335
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:15982071-15985207[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.1 1.3e+03 1.9 0.2 2 23 186 206 185 206 0.82 2 15 0.00049 0.12 14.5 1.8 1 23 212 235 212 235 0.93 3 15 0.063 16 7.9 0.3 1 23 244 267 244 267 0.90 4 15 7.4e-05 0.018 17.1 0.2 2 23 274 296 273 296 0.95 5 15 0.47 1.2e+02 5.1 0.2 3 12 305 314 304 323 0.89 6 15 0.12 29 7.1 3.8 2 23 343 364 342 364 0.98 7 15 0.0062 1.5 11.1 2.0 1 23 370 393 370 393 0.96 8 15 1.4 3.5e+02 3.6 1.7 2 23 402 423 402 423 0.96 9 15 0.048 12 8.2 0.8 1 23 431 454 431 454 0.87 10 15 0.0018 0.45 12.7 1.9 1 21 461 481 461 484 0.95 11 15 5.1e-06 0.0013 20.8 3.0 1 23 490 512 490 512 0.97 12 15 7.5e-07 0.00019 23.4 1.6 3 23 519 539 517 539 0.97 13 15 0.0019 0.48 12.6 2.5 1 23 545 567 545 567 0.98 14 15 0.076 19 7.6 6.4 1 23 572 594 572 594 0.98 15 15 3.4 8.5e+02 2.4 0.1 1 12 599 610 599 612 0.84
Sequence Information
- Coding Sequence
- ATGGAACCATCTATTGTTTGTCGTGCTTGTTTGACAACAATTTCTCTGGAATACATAGATTTAGAGACTCCACTGTATGCTGACATCACATTTTTAGACTGTTTGAACTATTGCACCAAACTTCAAGCTAGCTTGAAGGATGAATTACCAAACTACATCTGTGTTTCTTGTGGTAGATCCTTGCAGATAGCCTACGATTTTATAAAAGCATCCACTGATGCTGATCGAGTGCTTCGTGACAGCTTATTCTTCTTTGAAGACCTTCAACATTGTGAGGACAGCAGGAGTGCATTGCATGACGTTGATGGATTTGTTAAAAAGGAAGAGAATTGTCAGGATCTGGAATACAATACAGAATATgtggaagaaatagaaaacttTAATATGAACGAAGTAAAAGTGGAGGATGTTAAAGATCTGCCCAAATTTGAGGTAGTAATTTCCAATGAAGAAGTTGTCGTTAAAGAGGACAATGACACAGATGATGATGCTAGTGAATGGCCTGTTTTGAGATTGGATGATGAAGATGACTTGGTAGAGGAGAATGAACATTTGAAATGTTATATTTGCGAGAAAATGATTGCAAAAGACGAGTATGAAGGCCATACAAATATGCATTCGGGTAATAGAGCATACAAATGCGATGAATGTGACGAGAAGTTCTTCTCCAAAAAGAATATGGAAATGCACAAGGTATCAAGACATAAATCTAAGCAACGGCGAGAGAACTACATTTGCGGCTGGTGTGGAGAAGCCTTTAATTGTAGATCAAGGCTAATCAATCACAAGGTTGTAGATCATAAAGGTCAAGTACCAACCTCCTGTTTAACATGTGGTGAGAAATTCTCCGATGAAGCCGGCCTGCGACGACATGTGAAGAAAGCCCACGGTATCCCAAGAAAACCAGTTCTATGCCCATATTGCAATAAGGAATACAAGAACATATCCATACACATAAAATTTAATCATCCAGATATTTTGAAGATGCCTATTCCAGGCGATGGCAGCGCCAAATTGCCTAAAAACCAGTGCCCGCACTGCTTCCGTGTTTGCCTAAGCAGAAACATGTTAAGTGATCACATAAACACACATACAGGCGAACGGCCCTATTCCTGTGGCGTCTGTGAAaaaacatttcatcaaaaatacGCTCGCGATAGGCATGTGTACACAGTTCACGAGGCAAAGGATGGACCAgcggaaaaatgtgatctttgtAAATTCAGTACATCCAACGTTCTTTCGATGAGATCACATAAGGCTCGGCACAAGCGACCTATTGAAAAGAAATACCTTTGCTCTTTCTGTCCGATGATATTCGTCAATCCAAAGAAACTTCATATGCACGAAGATTTAAAACATGGCACCGGAGAAAAGGCATACCAATGTGACATTTGTAAAAAGAAATTCATAGTCATGCGAAAATTGAAGGAACACATAATGTGTGTACATGTTAGCGGTCGCCCGCACGAGTGCCCAGAGTGTAAGAAAACTTTTAAGAATGATTTCCAACTGAAGGCGCACCAGAAATTGCACAATGGCAAACAAATCGATTGTCCACATTGTGAGAAGAAGTTTGCTAGGCGGGTCGACTTCAAAATTCACATGAGAACGCATACAGGCGAGTTACCCTATGAATGCCATCTTTGTGACAAGCGCTATGCAATTAAAGTGAGACTCACGTATCACTTACAGAAGCATATGGGATACAAACATAAATGTCAGCACTGTTCAAGTGAATATAACAGTAGAGCTAAATTGCGGCTGCATATGTTCAAGCACATTGGGATGCCATATATTTGCGACCATTGCCAAATGGGCTACCCAAACCGAGTAGGGTGA
- Protein Sequence
- MEPSIVCRACLTTISLEYIDLETPLYADITFLDCLNYCTKLQASLKDELPNYICVSCGRSLQIAYDFIKASTDADRVLRDSLFFFEDLQHCEDSRSALHDVDGFVKKEENCQDLEYNTEYVEEIENFNMNEVKVEDVKDLPKFEVVISNEEVVVKEDNDTDDDASEWPVLRLDDEDDLVEENEHLKCYICEKMIAKDEYEGHTNMHSGNRAYKCDECDEKFFSKKNMEMHKVSRHKSKQRRENYICGWCGEAFNCRSRLINHKVVDHKGQVPTSCLTCGEKFSDEAGLRRHVKKAHGIPRKPVLCPYCNKEYKNISIHIKFNHPDILKMPIPGDGSAKLPKNQCPHCFRVCLSRNMLSDHINTHTGERPYSCGVCEKTFHQKYARDRHVYTVHEAKDGPAEKCDLCKFSTSNVLSMRSHKARHKRPIEKKYLCSFCPMIFVNPKKLHMHEDLKHGTGEKAYQCDICKKKFIVMRKLKEHIMCVHVSGRPHECPECKKTFKNDFQLKAHQKLHNGKQIDCPHCEKKFARRVDFKIHMRTHTGELPYECHLCDKRYAIKVRLTYHLQKHMGYKHKCQHCSSEYNSRAKLRLHMFKHIGMPYICDHCQMGYPNRVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -