Basic Information

Insect: Pocota personata
Gene Symbol: -
Assembly: GCA_963082735.1
Location: OY720430.1:130842224-130843403[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.34 85 5.6 0.4 1 23 33 55 33 56 0.93

2 8 3e-05 0.0076 18.3 1.6 1 20 178 197 178 200 0.93

3 8 4.5e-05 0.011 17.8 0.2 2 23 207 229 206 229 0.96

4 8 0.00015 0.038 16.1 3.0 1 23 235 257 235 257 0.99

5 8 8.2e-05 0.02 17.0 1.9 1 23 263 285 263 285 0.97

6 8 2.1e-05 0.0053 18.8 4.1 1 23 291 313 291 313 0.98

7 8 1e-06 0.00026 22.9 3.3 1 23 319 341 319 341 0.97

8 8 3.2e-05 0.0078 18.3 2.2 2 23 347 368 346 368 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.34	85	5.6	0.4	1	23	33	55	33	56	0.93
2	8	3e-05	0.0076	18.3	1.6	1	20	178	197	178	200	0.93
3	8	4.5e-05	0.011	17.8	0.2	2	23	207	229	206	229	0.96
4	8	0.00015	0.038	16.1	3.0	1	23	235	257	235	257	0.99
5	8	8.2e-05	0.02	17.0	1.9	1	23	263	285	263	285	0.97
6	8	2.1e-05	0.0053	18.8	4.1	1	23	291	313	291	313	0.98
7	8	1e-06	0.00026	22.9	3.3	1	23	319	341	319	341	0.97
8	8	3.2e-05	0.0078	18.3	2.2	2	23	347	368	346	368	0.96

Sequence Information

Coding Sequence: ATGTCGAATTCTCCGAGAAACCAGATCTATGTGGAAAACAATAGGTTATATTCTAAATTTGGAGAAATATTCTTTACGACCGATTGTCGTTGTCTTTTTGTGTGCACTGCTTGCGACTATGACTTCGAGTTCTTTGATGTATTTATTGAACACATTGGGATCCATCACGATTTTCAGGAGGTCTTTCAAAACAGCGCTACAAAGAGGCTAGTATGTATATCGAATGTAATGGATGATAGCTTTAAAAGTGAAGAATCGGAATTAATCGAGGAAGACACCAAAGACCTCATAGAATACAAGGAGGAGGAATATAATGAGGAGAAGGACAATGCTAGTCAAGAATCGAAAGTTTTCACCGAAGATAACTTTTCAGAAATATCGTTCGATTCTCCGCAGTCTATATTCAACCCGGAAATTGAGCCGTACTTAACAGGTATTAAAGATGAGGAGGGCTTAAAAAGTGAATGCGAAATCACCCCTGAAAATGTAGAGATACCTAAACATGATTCAAATAGTCCAGCGCAAATAGAACACAAATGCGATATGTGCGGAAAGAAATTTGCAAGTGAAAACAATCTCGTACGCCACAAATGGAGACACTCTAGTCAAACAAAATGGTCATGCCCTACATGCGGAAAGGTGACAACGACTAAGGATGGCATGATCTTACACGTTCGTAGAAAGCACACCGGTGAAAAACCATTCAAATGCAAGTtctgtgagaaaacttttgcTTCGGCAGCACAGAGAAATCTTCATCATCGTGTACACACTGGTTACAAGCCGTATGTATGCGAAAAGTGTGGTAAAACATTTAAATTGCATACAGTCCTTCGTTACCACATGGACTGGCATTTGGGCATAAAGAATTACAAGTGTGAAAAGTGTGACAAGAGATTCCATTCTACAAGTGAACTGAATAATCACAAAAGCGTTCACACTTGGGAGAGACCCTTTCCATGCTCAGATTGTAACTTGCGGTTCAAAACGAAAAGGCACTTACAGCGACACCAAGAGGTTCACAGTGGGAAACTGAAAATGTGCCAATACTGCAACAAAGGATTTGCGCATATCTCAACATTGACATCTCATTTAAGACTACACCAACTAGATGAAATAGAATGA
Protein Sequence: MSNSPRNQIYVENNRLYSKFGEIFFTTDCRCLFVCTACDYDFEFFDVFIEHIGIHHDFQEVFQNSATKRLVCISNVMDDSFKSEESELIEEDTKDLIEYKEEEYNEEKDNASQESKVFTEDNFSEISFDSPQSIFNPEIEPYLTGIKDEEGLKSECEITPENVEIPKHDSNSPAQIEHKCDMCGKKFASENNLVRHKWRHSSQTKWSCPTCGKVTTTKDGMILHVRRKHTGEKPFKCKFCEKTFASAAQRNLHHRVHTGYKPYVCEKCGKTFKLHTVLRYHMDWHLGIKNYKCEKCDKRFHSTSELNNHKSVHTWERPFPCSDCNLRFKTKRHLQRHQEVHSGKLKMCQYCNKGFAHISTLTSHLRLHQLDEIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -