Pper032411.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- grau
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:184728845-184761511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0086 2.1 10.6 0.4 2 23 242 264 241 264 0.96 2 14 2.9 7.2e+02 2.6 1.0 6 23 273 291 273 291 0.96 3 14 0.71 1.8e+02 4.6 0.1 3 21 295 313 294 314 0.92 4 14 0.12 31 7.0 0.7 3 23 422 443 420 443 0.94 5 14 0.055 14 8.1 1.2 2 23 660 682 659 682 0.94 6 14 5.3 1.3e+03 1.8 0.1 6 23 691 708 691 708 0.97 7 14 0.00028 0.07 15.3 0.8 1 23 714 737 714 737 0.94 8 14 2e-05 0.005 18.9 2.0 1 23 745 767 745 767 0.98 9 14 3.2e-06 0.00081 21.4 0.3 1 23 775 798 775 798 0.96 10 14 0.56 1.4e+02 4.9 0.1 3 23 806 826 804 826 0.94 11 14 0.019 4.7 9.5 0.7 2 23 835 856 834 856 0.96 12 14 3.4e-05 0.0084 18.2 0.3 1 23 861 884 861 884 0.96 13 14 2.1e-05 0.0052 18.8 3.8 1 23 890 912 890 912 0.98 14 14 3.4e-05 0.0084 18.2 6.2 1 23 918 941 918 941 0.98
Sequence Information
- Coding Sequence
- ATGATTTGCCGTGTATGTTTGTCTGAATGTGATGATAGTATTGACATATTAAGCGATGAAAGAATCCCACAGTACATCACAAAGTTCCTGCAATTGGAGCTTACAATAGAGGATCCAGTTTCGAAGGTGATATGCGAACTGTGCTGGAGGGAGTTGGAGAACTTTGCAAATTTCCACCTTCTAGTGAGCGAAGCCCAATGTAAACTGTCTATAGTTCACGAGGAATTGACGAAGATAGTTAATCAGAATGAAGGTGATAGTCACATAAAAGAAACGTTTGTTGACGAATTTTTTACTGCCAGCCCAGAACTGACCCCAccgaaaaaggaaaacactgcCGAAAAAATAGAAGATGCAACCGTTGATATTGCTGACGCGCTTGACTACTTCGAAATATTTGAGCTACATAAAGAAGAGGTAATTGAACCTGCAACCACTATTCCACCTCATACCAAAGATCTGCCTTCTGTGGAAAATATTACATGTCCTTCTCGTAAAAAACATGCATTTTCCCAAGAAAATATCTCAGAAGGAACGAAAAGGAAATATCATCTACGGAGTACAAGAATAGACCAAAAACAGATCGAAAAAGGCGATATTAATGTTCACCAAAAACATGACCACACCATTATAGAGGTAAAAAAAGGCAGGACGGAGAGAAGTGCAAAACTGTGGGAGAAATCTCAAGAATTCGATGAAATCattaatacgagtatgcaaTTAGTCTGCAACATTTGCGCTAAAAATCTAACAGATTTCCGTGACTTGCAAAGTCACTTTCGTCGCGCTCATAAAACTAAAGGCTACGCTGTGTGTTGCAATAAGCGACTGTACAAGCGCGGCATGCTTGTTCATCATATCAGTTCATACCATCAGAGGAATTGTAGATTTTGTGGAATACGAGCATCATCTGTGTATGCTCTGCAGAAACACGCAAATATGTGCGCCAAACGAATTGCGGGTCTTGGAGATGAAACCGCTGAAGCAAATCACTGCTTTCAAACAGATGATCTACATCCAAATACAACAACTGAAGCTGCGATTATTAGTCCACCTGAGATCAGCGAGAAATCGTCAAAGAGAGCTGAAGTTCTAAAGCAGGAAAAACCCGTAGCAAGCGAAGTAAGCGCTGTGAAAAGAAAACGCGGTCGACCGAGAAAAGGAaacgaaaaacagaaaaaagacATCTCGGAGAGAAGCATGAAGCTGTGGGAAAAATCCAGGGAATTCGATAAAATCATTAAGGAAAACATGAACCTATTCTGTCAAATTTGCAATGCTAATCTAATTGACTTCGCTGAATTGCAACGTCACTTCCGACACGTTCACCGTCAAAGAGGCTATGCCGTGTGTTGCAATGTGCGACTGTACAAACGACCCTTTGTTGTCGGGCACATCAATGCGCATAAAAGGTTGTCCTGCCCAGTGAAAGAAGGAGAAGAAAAGCCAAAAGCTGAAAGAGTCGAGTCTAAATTCGTCAAAAGATATGATGAAatcattcaaaagaatatgaatcTAGTCTGTGACATTTGCAATGACACTCTCGATAGAAGTGATGCATTTCACTTCTTAGATGAAGAAGTCGTGAAGGTTGAACCACAGAACGAAGACATCCCGGAAAATACGATCATAACAACACCTGAAATCGATGAACCACATTTTACTCGAAGAATTACCAGAGGGACAAAACTTAAGAGACAGGCAACACCCGAAAAAGATATCCCCTCTGACATCAAAGAGAAGCGAAAGTGCGGTCGACCCAAAAAGGATAAAGTTGAAAGGCAGCAAACACctgagaaaaacgaaaaagaGGAAGAAAGCATCATTCCCGATGTAAATGCAAAAAGGAAACGTGGTCGACCAAAAAAGGGAGAAGAAAGACCTAAAGTCGAAAAAAAGGTCAGGTCGGAAAAGTGTGAGAGAATTTTGGAAACTGCCAAAGAATTCGATGATATCATCCAGAAGAATATGAATCTAACATGCAACATATGTACGGCACATCTGTTTGACTTTAGTGAGTTGAAACGTCATTTCCGAGCTGCTCACAACCGTAAAGGTTACGCTGTGTGTTGCAACAAGCGGCTGTACAAGCGCGGTTTGGTTGTCGATCACATCAATACGCACAACAACCCTGAGTATTTTAAGTGCACAGAATGTGGTAAGGTCCTGGCTGATAGAATGTGCCTTCGAAATCACGTTCTGCTGATGCATCAAAACGAAGACGATAAGGTTTATCAGTGTCCATATTGCCCTAAGAAATATGCTAAACAATATCTGCTGGTACATCATCAGGTCAAACATATTCCACAGGAAGACTGCACCTTCATTTGCGCTGAGTGCGGACGGGGATTTCCCACAAAGACAACCCTAACAAAGCATATGAATCAAATTCACTCGACAATATATGACAAAATGTGTGAAATTTGTGCAAAACTCATCCGTGGAAATGCAGCTTTCGAGCGCCACATGGAGGAACACGAGGGCATAGTTCGACCGCAGGTTCAATGTCAGATATGCGGCTCGTGGTTAAAGGATAAGAACAGCCTGCGGAAGCACATGTATAAGCATGATGGGAAGTCGTACTCCTGTAATGTGTGCGGTAAAAGCGCACCATCAAAGAGTGCTCTGCAAAGCCATTTCAGATATGTGCACCAAACGGTTCGTCAATTTCATTGCACTTTCTGTGACAAATCATTCAAGAAGGCTGTCAATCTGAGGGAGCACTTAACAACTCACACCGGGGAGGTATTGTACACATGTCCCCATTGTCCGAAAACATTCAATTCCAAGGCCAATATGCATTCTCATCGAAAAAAGAAGCATCGCGAGGAGTGGGAAGCCAATAGACGTTACAATATTAAACAAGTGACGTCTACTGAAACAAATTCCATATTAAGTTAA
- Protein Sequence
- MICRVCLSECDDSIDILSDERIPQYITKFLQLELTIEDPVSKVICELCWRELENFANFHLLVSEAQCKLSIVHEELTKIVNQNEGDSHIKETFVDEFFTASPELTPPKKENTAEKIEDATVDIADALDYFEIFELHKEEVIEPATTIPPHTKDLPSVENITCPSRKKHAFSQENISEGTKRKYHLRSTRIDQKQIEKGDINVHQKHDHTIIEVKKGRTERSAKLWEKSQEFDEIINTSMQLVCNICAKNLTDFRDLQSHFRRAHKTKGYAVCCNKRLYKRGMLVHHISSYHQRNCRFCGIRASSVYALQKHANMCAKRIAGLGDETAEANHCFQTDDLHPNTTTEAAIISPPEISEKSSKRAEVLKQEKPVASEVSAVKRKRGRPRKGNEKQKKDISERSMKLWEKSREFDKIIKENMNLFCQICNANLIDFAELQRHFRHVHRQRGYAVCCNVRLYKRPFVVGHINAHKRLSCPVKEGEEKPKAERVESKFVKRYDEIIQKNMNLVCDICNDTLDRSDAFHFLDEEVVKVEPQNEDIPENTIITTPEIDEPHFTRRITRGTKLKRQATPEKDIPSDIKEKRKCGRPKKDKVERQQTPEKNEKEEESIIPDVNAKRKRGRPKKGEERPKVEKKVRSEKCERILETAKEFDDIIQKNMNLTCNICTAHLFDFSELKRHFRAAHNRKGYAVCCNKRLYKRGLVVDHINTHNNPEYFKCTECGKVLADRMCLRNHVLLMHQNEDDKVYQCPYCPKKYAKQYLLVHHQVKHIPQEDCTFICAECGRGFPTKTTLTKHMNQIHSTIYDKMCEICAKLIRGNAAFERHMEEHEGIVRPQVQCQICGSWLKDKNSLRKHMYKHDGKSYSCNVCGKSAPSKSALQSHFRYVHQTVRQFHCTFCDKSFKKAVNLREHLTTHTGEVLYTCPHCPKTFNSKANMHSHRKKKHREEWEANRRYNIKQVTSTETNSILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -