Basic Information

Insect: Pocota personata
Gene Symbol: su(Hw)
Assembly: GCA_963082735.1
Location: OY720429.1:240938930-240948859[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0015 0.36 13.0 2.8 1 21 123 143 123 144 0.94

2 10 5.5e-06 0.0014 20.7 0.3 3 23 195 216 193 216 0.92

3 10 0.37 93 5.4 0.1 1 23 222 244 222 244 0.96

4 10 6.9e-06 0.0017 20.3 4.5 1 21 251 271 251 272 0.94

5 10 9.5e-07 0.00023 23.1 0.8 2 23 284 305 283 305 0.97

6 10 0.00012 0.03 16.4 6.2 1 23 316 338 316 338 0.99

7 10 3.7e-05 0.0091 18.1 1.0 1 23 344 366 344 366 0.97

8 10 2.2e-05 0.0053 18.8 0.6 1 23 372 394 372 394 0.99

9 10 6e-06 0.0015 20.5 5.5 1 23 400 422 400 422 0.97

10 10 0.14 35 6.8 0.8 1 13 426 438 426 440 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0015	0.36	13.0	2.8	1	21	123	143	123	144	0.94
2	10	5.5e-06	0.0014	20.7	0.3	3	23	195	216	193	216	0.92
3	10	0.37	93	5.4	0.1	1	23	222	244	222	244	0.96
4	10	6.9e-06	0.0017	20.3	4.5	1	21	251	271	251	272	0.94
5	10	9.5e-07	0.00023	23.1	0.8	2	23	284	305	283	305	0.97
6	10	0.00012	0.03	16.4	6.2	1	23	316	338	316	338	0.99
7	10	3.7e-05	0.0091	18.1	1.0	1	23	344	366	344	366	0.97
8	10	2.2e-05	0.0053	18.8	0.6	1	23	372	394	372	394	0.99
9	10	6e-06	0.0015	20.5	5.5	1	23	400	422	400	422	0.97
10	10	0.14	35	6.8	0.8	1	13	426	438	426	440	0.89

Sequence Information

Coding Sequence: ATGTTCTCAGGTGATCGATTGGCCGAGGGACTCCAGTTCTTTGTCTTGTCGAACTCGCGTACCAGCAGTAGTGCACTACTgctgaatgcaaaaaaaacaagATCAGCAACGATCGTTAAGAAAAGCAAGCCGGATCCAGATATTGAATTTGTCCTGCCAGATCCATCAGCACCGACTGATCACTACCTTCTTACGGAGATCAAAGGCGATGaggatgaaaatgaaattgattttgttcTAACGGAAAATCGCTTTGAAGGGGAAGGTGCACAACCGGCTGAATGTCGAGAAGAGATTGATAATTGGGAAGAAGGGGGTGACATCGACGATGACGACAGTAATGTAAACACGAAGGAAATTGTCGAACATGTTTGTGGCAAGTGTTATAAATCTTTTCATAGGATAAAGATGCTAAAACGTCACATGGAGTATTGTATCTTCAACAGCGACATGGTATTGCGAAGAGCAGAAATGCAAAATAATATAGAAAAGATCGAGAAAGAGGCGCTCATTATGGAGAAGAAAGATGTTTGCTTCTGCTGTGGTGATAGCTACGATACCTGTCATTTGGGACACATAAACTGCAGTGAATGCCCGAAAACGTTTAAAACACAAATTAGCCTTGAACGCCATATATTTCTTATTCATTCGGAACACAATGATTTTCCTTGTGACACATGCAATGGTCGTATCCGTACGGAATTATTGTTGAAATTGCATATTGAGCAACATAAACAACGTGGCAAACCTTTTGCTTGCAAGACATGTGGAAAAGACTTTACGCGACAATATCACTTGAAGAGACATCATAAGAATTCTTTATGTGGTGGAGGTAAGGCTGAAATGATGCAGTGTAAGGTTTGTGGGAAGGAATTCTTTCGATTGGACAACTTGCGTGTACATTTGAAGTCACACTTGGGTCAAGGTACGCCCAAGAAACCGGAATATACATGTCCGTGCTGTAAGAAATGCTTCTACAGTTTATCAACATTGAAtatTCACATTCGTACTCATACGGGAGAACGGCCTTTTGACTGTGACCTTTGTGAGAAGAATTTTCCATCGTTGGTCTCATTGAAGAAGCACAGAAGATATCACACTGGCGAGAAACCCTATACCTGTGAAGTGtgCCAGCAAAACTTTGCTGTAAAAGAGGTCCTTAACAGACATATGAAACGACACACCGGTCAGAAGCCACACCATTGCAATCAATGCGACAAGCGTTTCATACAAGCCACTCAGTTGAGAAATCATTTACGTACACACTTACGGCCGTTTGAATGCACGATGTGtccagaaaaatttaaaactgaaaagcaACCTGAGAGCAGAGCTAAAGAAATCCTAGCGAATTGCTTACAAGACGAAACACCAAAAAAAGTAAGCGCTAAGACTATGACCGATGAGGATGTACAAATTTCGGAAAAAGTAGGTAAATTGCTTGATATGCTAGTGGATGTAGAGACACTGGTAAAATTTGGCTGGCCCGAGGATTCTGTTGAAAGTgtTCTTTGTAAAGTGATTGAGAACTGTGGCTATAATCTGTACAAGACGAAATTTACCGAGGATTATGGTACAAGGATGAGGGAGTTCGTAAAACTTCTTTTCACAGTGGTCATTCGAAATGATGCAGTCAAAGAACTTTTGAATAATTATTCAATTGATGAAGTTATTGATTTCGTCCTTCCAGTGATGATGATgactaaaaattacaattttatttaa
Protein Sequence: MFSGDRLAEGLQFFVLSNSRTSSSALLLNAKKTRSATIVKKSKPDPDIEFVLPDPSAPTDHYLLTEIKGDEDENEIDFVLTENRFEGEGAQPAECREEIDNWEEGGDIDDDDSNVNTKEIVEHVCGKCYKSFHRIKMLKRHMEYCIFNSDMVLRRAEMQNNIEKIEKEALIMEKKDVCFCCGDSYDTCHLGHINCSECPKTFKTQISLERHIFLIHSEHNDFPCDTCNGRIRTELLLKLHIEQHKQRGKPFACKTCGKDFTRQYHLKRHHKNSLCGGGKAEMMQCKVCGKEFFRLDNLRVHLKSHLGQGTPKKPEYTCPCCKKCFYSLSTLNIHIRTHTGERPFDCDLCEKNFPSLVSLKKHRRYHTGEKPYTCEVCQQNFAVKEVLNRHMKRHTGQKPHHCNQCDKRFIQATQLRNHLRTHLRPFECTMCPEKFKTEKQPESRAKEILANCLQDETPKKVSAKTMTDEDVQISEKVGKLLDMLVDVETLVKFGWPEDSVESVLCKVIENCGYNLYKTKFTEDYGTRMREFVKLLFTVVIRNDAVKELLNNYSIDEVIDFVLPVMMMTKNYNFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -