Pper043705.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720431.1:116552565-116564840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00079 0.2 13.9 0.7 1 23 173 195 173 195 0.95 2 15 6.3e-05 0.016 17.3 1.0 1 23 205 228 205 228 0.98 3 15 0.00071 0.18 14.0 0.3 1 23 234 256 234 256 0.92 4 15 0.0003 0.075 15.2 1.1 1 23 266 289 266 289 0.98 5 15 3.1e-05 0.0077 18.3 0.8 1 21 295 315 295 316 0.95 6 15 1.6 3.9e+02 3.5 0.0 2 20 356 374 355 377 0.92 7 15 1.8e-06 0.00046 22.1 1.4 2 23 382 403 381 403 0.97 8 15 0.00023 0.058 15.5 0.5 1 23 409 431 409 431 0.98 9 15 2.4e-05 0.0059 18.7 0.9 1 23 437 459 437 459 0.98 10 15 0.52 1.3e+02 5.0 0.3 1 23 654 679 654 679 0.92 11 15 0.003 0.74 12.0 1.5 1 23 686 708 686 708 0.98 12 15 1.2e-05 0.0029 19.6 0.3 1 23 713 735 713 735 0.99 13 15 2.6e-07 6.4e-05 24.8 1.3 1 23 741 763 741 763 0.99 14 15 0.00062 0.15 14.2 2.5 1 23 769 791 769 791 0.99 15 15 0.00018 0.044 15.9 0.6 2 20 798 816 797 818 0.94
Sequence Information
- Coding Sequence
- ATGGACCAAAATTTGACTAACGTAAATCTCTTGGAATCCTTAATTGAATGTAATGGGACAATTTCCGATCGGATCTCTAAAACTGAAGTGTTATTTACGCAAATATGCCGCACATGTCTCAGTCAAGCAAAGGACAACGATTTGTGGTATAACATATTTTTTACTAAGGACAGCAACGGTACTTCGTTGTCCATTAAGGATATGATAGAAGTGCTAAGCGAAATAAGGATTAATGCGGAAGACAAGATGCCCCATCACATATGCCACCGTTGCCTGAGGGCTGTAGAAGATGCCTATTCATTCCGTGCCAATAGCCAGCGAATTGATGAGATACTGAAACGTTTAGTTAAGCAAATATACACTCCGAGTAAAGAGACGCACGCTGAAAATAAGTTGATTTCCTGCACAGATGTAGCGAATCCAATGGAATCTGAAAAAATCGATGAAACAACAGTTGCTATACACGTCGAAGGTTATCAGGTGTCCTATGTTAAGGAAGAGTTTGGATCTTCAAGTTTTCAATGCAATTCGTGTGATATGATATTTACAACGCAAATAGATTTGGACAAGCACAAGACCGAGCATGTTCCAACAGAGGGCATAAGGAAGCTATTCAAATGTGGAATTTGTCCGAAGGAGTATAGCTTTCGTAATGGATTACATAACCACATGATGTCTGCCCATGTACAGACAAAGCAATTCCCATGCAATCAGTGTAATATGAATTTTGCAAACCAAATCGATCTGGAAAAGCACAACACCGAACATGGCCCAACAGATAGCAAAAAGAAGCCGTTCAAATGCGGAATTTGCTCAAAAGAGTATAGCTTTCGGAACGGACTGCATAACCACATTATTACTGCGCATATACAGAAGAAGGAATTCCAATGTCCGGTATGTGGAAAAATGTTCAAGAAAAGAGATAGATTACTGCAGCATAAGAAATCCCTTTGCATCGCTCCATATGCAGTAACTAAGTTGGCAAAACCAATATCGCAAATTACGGTACACCCCGTTGGGAAATGGTTGGATGCTGCTAACATACGAGTGGAAATCAAAAACGTGTCGTGTTCTTTGTGTGAAGTGaCATTTGAGCTTGAAGGTGACTTTATTAACCATCTGCCGGGACATTCAACAGAGAAAAGATGTCCCTACTGCAAAAAATTCTTTAGTCGTCCGCTAAATCTAGAGACCCATGTCCGATCTCATACTAGTGAAAGACCTTTTGTATGTCCACTGTGTTCGAAGGGATTTAGTGCTACTCGAACTTTGCGCAATCATCTGAAACTTCATACACGAAGACAAGGATACGAGTGTAACACGTGCGGAAAAAAGTACGTTTCCGAAAAAGAGCTTGTAACGCATACTAAAAGCCATGAGCAGGAACCAGTGTCTGTTGACTTGGACGAATATGAAGAGGCGATTTCTTTTGCAGAAAAAATGTCGTTAAATTCAAATGATTGTAAAGAAGGCGTATTTAAGGAAGAACTTGGCAGTCCTATAGATTTAGACGATAATAATGATCGACCATATAAGATAAAACCTGGAATTACAAGCAATAAACCATCTATTAGCAGTGTGAGTTGTAGCACATCTTCCCAATCGATTTGCAAATCTGAAGAAGAGGCAGTCATTTTTAAGAAGGAAAACGTTGAAGTCTCAAGTGCATCAGATAAGAATCAATTGCAACCATTTTCTGATGAATCTATTTGGGAAGAGCCGCCAATTGGATTTGACATTACTGTCAAGGAAGAGAAATTAGACGATTGCCATTCCGCGTTTGAAGTCACCAATGAACCACTCAGTGACGATGAAACATCCTTCGATCAGGACTCTACGGTTAATCAAGAAAAATCAGACGACAACCATTCTACGTTTAAGATTACCAATGAACCGTCGATTTGTCTTGAAGCATTCGATCAGCCCAACcaagaaccaacagcaacaacttaCACCAGCTTTACATGCGCAGTTCCAGAGTGCAAAATAgggTTTAGATACTATCGAGACATCATCAATCATTACACAAGTCAACATTGCGTGGGACCGCCTCCATTCAAGTGCCCCGTATGTACAATGTTTTTTCCTGTAAAACTGGATGTGCGTCATCATCTGAAATCGCATTTAACGTGTGAATACAAGTGCCCCTATTGTCCCAGATCATATTGGCAGCTCGGTGACTTAAAAATACATCTACGCACGCATACTGGCGAACGGCCTTACAAATGCACAAAGTGTCCTAAAAGGTTCAAGCAGCGACCTGCTTTAAATGTTCACATTAAGACTCACAACATTTCCAAAGAATACAAATGCAATATTTGCTCCAAAGAGTTCTTTTCGTACAATGGTCTGTTCCTACACACGAAAAGCCACACAGAAATCAAGGAGTTACAGTGTAATATTTGCAGCAAACAGTTTCCAACAAAGACCCGCCTACGGCGACATCAGAGTGGTGTTTGTTCCGTTCGTGctttaacaaaaatttcaaatggaAGTTAG
- Protein Sequence
- MDQNLTNVNLLESLIECNGTISDRISKTEVLFTQICRTCLSQAKDNDLWYNIFFTKDSNGTSLSIKDMIEVLSEIRINAEDKMPHHICHRCLRAVEDAYSFRANSQRIDEILKRLVKQIYTPSKETHAENKLISCTDVANPMESEKIDETTVAIHVEGYQVSYVKEEFGSSSFQCNSCDMIFTTQIDLDKHKTEHVPTEGIRKLFKCGICPKEYSFRNGLHNHMMSAHVQTKQFPCNQCNMNFANQIDLEKHNTEHGPTDSKKKPFKCGICSKEYSFRNGLHNHIITAHIQKKEFQCPVCGKMFKKRDRLLQHKKSLCIAPYAVTKLAKPISQITVHPVGKWLDAANIRVEIKNVSCSLCEVTFELEGDFINHLPGHSTEKRCPYCKKFFSRPLNLETHVRSHTSERPFVCPLCSKGFSATRTLRNHLKLHTRRQGYECNTCGKKYVSEKELVTHTKSHEQEPVSVDLDEYEEAISFAEKMSLNSNDCKEGVFKEELGSPIDLDDNNDRPYKIKPGITSNKPSISSVSCSTSSQSICKSEEEAVIFKKENVEVSSASDKNQLQPFSDESIWEEPPIGFDITVKEEKLDDCHSAFEVTNEPLSDDETSFDQDSTVNQEKSDDNHSTFKITNEPSICLEAFDQPNQEPTATTYTSFTCAVPECKIGFRYYRDIINHYTSQHCVGPPPFKCPVCTMFFPVKLDVRHHLKSHLTCEYKCPYCPRSYWQLGDLKIHLRTHTGERPYKCTKCPKRFKQRPALNVHIKTHNISKEYKCNICSKEFFSYNGLFLHTKSHTEIKELQCNICSKQFPTKTRLRRHQSGVCSVRALTKISNGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -