Pper002349.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720429.1:32577625-32584567[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 5.8e-05 0.014 17.4 3.7 1 23 91 114 91 114 0.96 2 26 0.5 1.2e+02 5.0 5.5 1 23 121 143 121 143 0.98 3 26 3 7.5e+02 2.6 1.3 2 20 152 170 151 172 0.89 4 26 4.7e-05 0.012 17.7 0.3 3 23 184 204 183 204 0.98 5 26 3.1e-06 0.00076 21.5 0.7 1 23 211 233 211 233 0.96 6 26 0.55 1.4e+02 4.9 0.5 3 23 246 266 245 266 0.91 7 26 0.013 3.2 10.0 0.1 1 23 341 364 341 364 0.96 8 26 0.087 22 7.4 1.0 2 19 404 421 404 424 0.92 9 26 0.0037 0.91 11.8 3.1 2 23 432 453 431 453 0.98 10 26 1.5e-05 0.0038 19.3 0.5 1 23 460 482 460 482 0.98 11 26 0.00059 0.15 14.3 0.9 2 23 514 535 513 535 0.97 12 26 0.015 3.8 9.8 3.7 1 23 617 640 617 640 0.98 13 26 0.068 17 7.8 2.4 1 23 677 700 677 700 0.95 14 26 2.2 5.5e+02 3.0 5.1 1 23 710 732 710 732 0.92 15 26 7.4e-06 0.0018 20.2 1.0 1 23 739 761 739 761 0.98 16 26 0.0062 1.5 11.1 0.5 2 23 785 807 785 807 0.95 17 26 0.00074 0.18 14.0 2.0 1 23 848 871 848 871 0.95 18 26 0.25 62 6.0 4.8 1 22 878 899 878 899 0.96 19 26 0.059 15 8.0 0.3 1 23 908 931 908 931 0.91 20 26 0.0044 1.1 11.5 0.7 1 20 937 956 937 957 0.94 21 26 9.7e-05 0.024 16.7 0.9 1 23 967 989 967 989 0.98 22 26 1.2e-05 0.003 19.6 0.3 2 23 1010 1031 1009 1031 0.95 23 26 0.00016 0.039 16.1 4.3 1 23 1037 1059 1037 1059 0.99 24 26 1.6e-07 4.1e-05 25.5 3.3 1 23 1065 1087 1065 1087 0.98 25 26 4.6e-07 0.00011 24.1 2.4 1 23 1093 1115 1093 1115 0.99 26 26 0.003 0.75 12.0 0.2 1 23 1121 1145 1121 1145 0.94
Sequence Information
- Coding Sequence
- ATGCTGTGTAACTTCGACACGGCGCTCAGCGTTCGCGAGCTCCGTCGACACATTAGCTTACATAATAACTTGGAATCTATTGAAGATCTAGCTGGCAGTGAGGTTGTTAAAAAATTCTATCCAGATAAGGATTTGAATGAAGTAATTCCTTTGATTGCTAACCAAATCGAAGGGAAGCAATTTGGGAAATTCCATTCGATAGTCAATGCGTATAGCTACGAAATGGGTATAAGCGATTCGGATGAAAGTGATCCAGAAGGAGAATCTCAATACACTTGTGAAGTATGCAAGGAGTCCTTTACGCGAAAGCACAAGCTAATGACGCATCAGTCTTACGAGCACAGTTTCGACGAGTGTCCGTACAAATGTGAGGGATGCAAACTTCGATTCACATGCCAACGGGTACTTGAGAGTCACCTGAAGCACCACTGCGAAAATCCCGATAAGGACCTCCAATGCAACAAGTGTCCAGGTCGATTCAGTTGGCTCAAAAACTTTGAAACACACAAATGTGCCAAGAAAAAATCGATTGACAAGAAAAGCGCCAACTGTGAAATTTGTAATGAGGTTTTCGATTCTCCTAGAGATCTGAGAATTCACAAAAAGACCCATATACCGACGGGTAAGTCTCACGATTGCTCCGTGTGTGGTGAGAAATTTCCTCGTGCCGAGAATCTACGCTGGCATTTGAAAAAGCACGCTAAACAAGAAGAGTTGTTAGGGAAGAAAATGCTGTGCATGCTTTGCGATGAAGAGTTTTCAAATATAAGTACTTTAAAATTCCATTTATTCTTGCATTCTGATGGCCAATCATACGTGGATTTCAAGAACTGCGGATTTGTAAACAATTTCTATCCGGATGCGGTGGAAGGCACCATTTCGGAGAGCATTCGGAATTGTTTCAACGAGCAAAGACTGTGGCAACTATACCTGGCGGTGAATAAATTTGGTCACGAGATGGTCCTGAGTGATACCGATAGTGACGATGACGACGAGTGGAAGGAAGGTCCTCCAAAGACTTATATCTGTGAACTGTGTGATGTAAAATTTCCTCGTATGCAAGCTATGCGTGAACACCAAGCACGCTCGCATAGCTCAGAGAAGAATAGTTTTCCCCATAAATGCGGGGAGTGTGGTGATCAGTTCGTTTGCGAAGCTCTCTTAGATCGTCACACGAAAAGCGAATGCTTGAACTCGAACAGGACTAACGTATGCACGAAATGCGGCACCAAATTCACATGGAAGCAAAATTTGGTCGCCCACAACTGTGAGAAAAGCTCCAACGATGATAAAAAATGCGAGGTGTGCGGGAAGAAGTTCATTTGGCTTAAAGATCTGCACCGTCACAAGCGTAGCCACATGCCACATGAGAAGAAATTCGAATGTCTAGTGTGTGAAAGAAAATTCATCCGAAAGGATAACATGCGAGCACATTTGAAAGTCCACGAAGTTGATACTAATAAGCTTAAAGACAATGATGTGATTAAATGGGAACAACAGGACGAGAACGTGTGCAGGCCACACGGTgagaaaattattcaatgtaAGATCTGctcaacaaaatacaaatcaaTTCGAGATTTAACAAGTCACTTGTTGACCCACAAGGATCGTAAAAGTTTCAAACAGGGAGAATCGGAAGTGAGAGAGCTTTCAATGCGTCTGTTCCGCAGACTAATGGATGAGCGAGCTCTTTCAAAGGCAATCGCCAGAGATCTCTTAGCTGGAAAACATTCGCGCTTCTATTCGATCACAAACGAGTTAGGTTATGAGTTGAATCTGACTGATTCAGAAACCGGTAGCGATTTGGATACacacgatgacgatgatgacgatggtGTCAAAGGCTACAGCTGTCAACTATGTAAAAGCAGCTTCGATAGAAAGTTTAAAATGTTCGAACACCAAAGGAAGGATCATTCATGGGATGAACTGCCATTCGAGTGTACCTATTGTTCGGCGAAGTTTGCCTGCGAGAGCCTTTATAATTTTCATCTACAATACCAATGCGAGAATAGTGAAAAACAACACAAATGTAAGTTGTGCCCACTGAAGTTCATGTGGAAGGATAACCTTAGGATTCACGAAAGGTTTACCCATGATAAGGCCCCAACACATGCAAAGAGGCACCGTTGTACTTTCTGTGATAAGCGTTTTCTTTGGTTCAAGGATTTAACGAAACATAAGAAGATTCATCAGCTcgagaaggagaaatttgaatgtaCATGGTGTTTCAGAATCTTTATGCGAAGGGATAATCTAAAGGTTCATATGAAAGTTCATAAGAACGCTAACCATCTCTTATTGCCTGATATCTACTACCTGGCTCGACCAAATGGTACCAAAGTAGCTGAATGCAAGAATTGTGATCAGAAATACACCACCATTTTTGAGTTGCTCGAGCACATTCAAAATTCGCATTTAAAGTACCAAATGTTCGTTACCGCTCCTAATCCAAGCAGTTATTCGATAACAAATGCATTAGGCTATGAAATGGACATCGAGGACTCCGAAACAGAGAAAGAAGAACCCATAGATAAATACTTTTGTGAAATCTGTCATGCAGCATTCAATCGTCGTTTTAAACTGTTGAAGCATCAGCAAGCACTCCACTATTCCGACGCCATACCGCACAAATGCCCCCATTGCAACTTCAAATGTGTTTCAAAGTTTGTTCTTGGCTATCACATGCGAACCCAATGCATGAACGAGGAGAAGCACTACCGCTGTAGCAAGTGCACAATGCGATTTATGTGGCCGGAAAATCTAGAAAATCATGAAAGCTTAATACATGACGGCCCACGAGCGCACTCTTGCGAAGTTTGCAAGAGAGATTTTGCCACACAGCTCGACCTGAAGAACCACACTAATTGCGTGCCACCGATAGAGGTTCAACTTTTTGAATGTGAATTCTGTGACCGTAAGTATAACCGAAAAGATCGATTGATGGCGCACGTAAAAGTACACAATACTGATGAATCCAAAGAAACGCGCGTCAAAAGTACACAACCTACGGACAAGAAGTTTTTGTGTGCGTTCTGTGGCAAGGAAGTATCAAGTTCTTCGAATCTGGTGATACACATGCGGCGACATACGGGTGAGAAGCCATTTAAATGTGAGTTCTGCAATAAGGGCTTTCCGCGATCTTCAGATTTGAATTGTCACAGGCGAACGCACACTGGAGAGCGACCACACAAGTGTTCAGTGTGTGACAAGGCGTTCTCGCGCTCGTACAAACTGCAAACTCACATGCGGATTCATTCGGGAGAGAGGCCCTATAAGTGCACATactgtgagaagagcttcacgCAGTCGAATGATTTGACACTACATGTTCGTAGGCATACAGGCGAAAGGCCGTACATATGTGAGATTTGTGGAGACAGGTTTATACAGGGAACAGCACTTAGAAATCATCGAAGGACACGGGGACACTTCGAGCTTTAA
- Protein Sequence
- MLCNFDTALSVRELRRHISLHNNLESIEDLAGSEVVKKFYPDKDLNEVIPLIANQIEGKQFGKFHSIVNAYSYEMGISDSDESDPEGESQYTCEVCKESFTRKHKLMTHQSYEHSFDECPYKCEGCKLRFTCQRVLESHLKHHCENPDKDLQCNKCPGRFSWLKNFETHKCAKKKSIDKKSANCEICNEVFDSPRDLRIHKKTHIPTGKSHDCSVCGEKFPRAENLRWHLKKHAKQEELLGKKMLCMLCDEEFSNISTLKFHLFLHSDGQSYVDFKNCGFVNNFYPDAVEGTISESIRNCFNEQRLWQLYLAVNKFGHEMVLSDTDSDDDDEWKEGPPKTYICELCDVKFPRMQAMREHQARSHSSEKNSFPHKCGECGDQFVCEALLDRHTKSECLNSNRTNVCTKCGTKFTWKQNLVAHNCEKSSNDDKKCEVCGKKFIWLKDLHRHKRSHMPHEKKFECLVCERKFIRKDNMRAHLKVHEVDTNKLKDNDVIKWEQQDENVCRPHGEKIIQCKICSTKYKSIRDLTSHLLTHKDRKSFKQGESEVRELSMRLFRRLMDERALSKAIARDLLAGKHSRFYSITNELGYELNLTDSETGSDLDTHDDDDDDGVKGYSCQLCKSSFDRKFKMFEHQRKDHSWDELPFECTYCSAKFACESLYNFHLQYQCENSEKQHKCKLCPLKFMWKDNLRIHERFTHDKAPTHAKRHRCTFCDKRFLWFKDLTKHKKIHQLEKEKFECTWCFRIFMRRDNLKVHMKVHKNANHLLLPDIYYLARPNGTKVAECKNCDQKYTTIFELLEHIQNSHLKYQMFVTAPNPSSYSITNALGYEMDIEDSETEKEEPIDKYFCEICHAAFNRRFKLLKHQQALHYSDAIPHKCPHCNFKCVSKFVLGYHMRTQCMNEEKHYRCSKCTMRFMWPENLENHESLIHDGPRAHSCEVCKRDFATQLDLKNHTNCVPPIEVQLFECEFCDRKYNRKDRLMAHVKVHNTDESKETRVKSTQPTDKKFLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLNCHRRTHTGERPHKCSVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHVRRHTGERPYICEICGDRFIQGTALRNHRRTRGHFEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -