Pper004273.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720429.1:60330672-60331277[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-07 0.00022 22.5 0.0 3 41 16 54 14 57 0.90 2 2 3.6 3.5e+03 -0.5 0.0 25 39 92 108 87 112 0.69
Sequence Information
- Coding Sequence
- atgCCAAAGAGTAAGTCAGGAGTAAAAAGACCAGCTGTTGACGTTGACGCTTTACGGCGAGCTGTGGAGGAAGTAGTGGACAATGGAAAATCCATGTACACTGCAGCAAATATGTTCAACGTTTCCAAAACCACTTTAATGACGCATATTGCCAGACACAAAACATCGAACCATTCTGATTTCATTTATGAAAGCCGAATCAACTACCGTCAAATATTTTCGCCTGAAGAAAAAGATCTCCTAACAAAGTATTTTATACAGGCTTCCAAACTACACTACGGACTACCAAGGCCTgaattaaagaaattgaaattaaagaaaagaaattattttgatgaaaaaaataacaaaaccatTCCCAAAAACTGGTTTGAACAGGGTGTAGCTGGTAGGAACTGGCTTACCTTATTTCTCCAACGTCATCAAACAATTGCTCTTCGAAAACCCGAGGCAACCAGTCTTTCTAGAGCTAACAGCTTTAACGAAGCCAAcgcaaaaacaattttccgGAATTACAAAGATTGTTTATCCCGATACCACTTTACACCTGAGCTAACTAACTATTCAGCTCTTAATTTAGGTTCCAGCTTCAGGTTATTCATTTAA
- Protein Sequence
- MPKSKSGVKRPAVDVDALRRAVEEVVDNGKSMYTAANMFNVSKTTLMTHIARHKTSNHSDFIYESRINYRQIFSPEEKDLLTKYFIQASKLHYGLPRPELKKLKLKKRNYFDEKNNKTIPKNWFEQGVAGRNWLTLFLQRHQTIALRKPEATSLSRANSFNEANAKTIFRNYKDCLSRYHFTPELTNYSALNLGSSFRLFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -