Pper035917.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720431.1:18926108-18927040[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-09 1.8e-06 29.2 0.0 1 38 12 49 12 55 0.89 2 2 0.36 3.6e+02 2.7 0.0 25 39 169 183 168 187 0.87
Sequence Information
- Coding Sequence
- ATGCCAAAGAAAGGAAAACAATTGAGAAAATGGGACCCCACTGCAATGAAAAAGGCACTTGTTGCAATCAAGAATAACGAAATGGGTGTGAAGCTGGCTGCCAAAACATATAACGTACCAAAAACAACATTTCAACGTATGGCACGATCTGGTAAGCCTATTAGCGAAATTTTGTCCATCCCCTTGATTCGAAAACCAATTTTTAGTACTGCAATGGAAGACGAGCTCGTAAAATATTTACATGAAATGGAAAACCGTTTCTGGGGCTTAGCAAGAAGCTATATTCGAAGTCTGGCTTTTCAGATGACtcaaaaaaataacattcccaataaattttcattattgcATAAAACTGCAGGAAAAGATTGGCTTTATGGCTTTTTGAAAAGACACAAAAATGACCTAAGCTTTCGGCTTCTAACGGGTACTTCAATCGATAGAGCTAAGGGCTTTAATCAAGAAAGCGTAAGCatatttttcgatattttagAAGGggtgtatgaaaaatataacttcCCAGCATCCAGTATATGGAATGTGAATGAAACTGATCTCACCATAGTACAAAGTAAGGAGCCACAGATTTTAGCGATGAAAGGAAAACGGCAAATAGGAGCTTTGACGTCGGCGGAACGTGGTTCTCTGGTAACTGTGGTGAATTGCATGAGTGCAAGTGGAAATTTCATTTCACCATATTTTGTATTtccaagaaaaatacaaaacccACTCTATATGAACAACGCTCCTGCTGACTCCAAGGCCACTTTCCATATTTCTGGATGGATTCAGCTGCCCATTTTTATGGAGTGGTTCCGTCATTTCCTGGAGTTCTCCAAGCCTTCAGAAGAACAGCCAGTCCTTTTAATTTTAGATGGTCACTATAGCCATATCAGAAACCTGGAAGTTCTCGAGCGCGTCAAAATTTTGCTGTAA
- Protein Sequence
- MPKKGKQLRKWDPTAMKKALVAIKNNEMGVKLAAKTYNVPKTTFQRMARSGKPISEILSIPLIRKPIFSTAMEDELVKYLHEMENRFWGLARSYIRSLAFQMTQKNNIPNKFSLLHKTAGKDWLYGFLKRHKNDLSFRLLTGTSIDRAKGFNQESVSIFFDILEGVYEKYNFPASSIWNVNETDLTIVQSKEPQILAMKGKRQIGALTSAERGSLVTVVNCMSASGNFISPYFVFPRKIQNPLYMNNAPADSKATFHISGWIQLPIFMEWFRHFLEFSKPSEEQPVLLILDGHYSHIRNLEVLERVKILL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -