Pper023545.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:32238886-32254289[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.8e-13 4.7e-10 40.7 0.1 4 41 151 189 148 192 0.85 2 3 2.4 2.4e+03 0.0 0.0 28 37 222 231 221 237 0.85 3 3 4.7e-09 4.6e-06 27.9 0.0 3 38 260 295 259 300 0.87
Sequence Information
- Coding Sequence
- ATGCAACCAACATCAGTTTCAGTAGCAGCTGCTGTTACTTTTGCTGGATTGAAAGGAAAAGTTCAAAGAGCCATAATGAGAGCCAAGTCAGATGAAATAAAAAGTGTCGATGTCTCCGACACAGATTCAAATCCCGGCCAAGAATCGCTGCTGCCTGCTGCTGAATCTACAGATGCTTCCGTTTTCACGACCGATCAGTATATCATATTCGAACTGAAGACTGATACAGAACCAATGTATAACTATGTCATCACACAAGTGAAGAAACCACCACCCGATGATGGTGATCCCAATGAGGTGGTCACTTCTGATTTGATCAATAATGAAAATGATCCTGGGCAACAGCAAAATGCTGCTCCATATGTAATAAGTGTACAAATACCCGTTGAGGGTGACAAAGAAGAGACTAAGGAGAATTCGCCTAAATCTCGACGTGCTTTCAACCGAAAGAGGCTTGCAGAAGCTGTCCATGCTGTAGTCAATAAGGAACTGACCATAAGTAAAGCTGCCAATGTTTTTCAAGTGACAAAGAGCACCCTCTGGAGAGAGGTCAATAAACACACAAATCATCGCagaaaaaaagtcgatcaagaGTTGAATCGCAAGATCGCTGATCGTATTTGTGCTGGCGAATCTCTCTCAGTTATTTCGAGATCCTTAAAAGTGGCTAAATCCACCTTGCATCAGCATAAAGTTCGACTAGCGCAGAGCGGGCAGCTACCATCGAATGTAACACTTAAACCACCTGTAGATCCATCGGAGAGATTCGCCATGAAGGAGCGTATCATACAAGCGTTTCGTGGCTGCCGGGTAAATGGTATGTCAATACGTTTTGCGGCAAAGTTTTACTCCATACCACCGTCGACACTATGGAAATATATCCGACAATTTAAAGCTTCTCAACCTACAGTAAACCCAGTTGTAGAGCCCGTTGATGAAGAAGTAAGAGTAATCAAAGAAGATATTCCAGAAGAGCCATCGGAAAACAGCAGCGAAGAGGTGGATCTGAATGACTTTGACGTGGATGCCTATTGTGAGCAACAGGAGGAGACAGTCAGTGAGGATGGTGACTTTTTGATCAGTTTTGATTTTGAAACGTTCGAGGAATATGTAAAGAGAGAACTCGAATAA
- Protein Sequence
- MQPTSVSVAAAVTFAGLKGKVQRAIMRAKSDEIKSVDVSDTDSNPGQESLLPAAESTDASVFTTDQYIIFELKTDTEPMYNYVITQVKKPPPDDGDPNEVVTSDLINNENDPGQQQNAAPYVISVQIPVEGDKEETKENSPKSRRAFNRKRLAEAVHAVVNKELTISKAANVFQVTKSTLWREVNKHTNHRRKKVDQELNRKIADRICAGESLSVISRSLKVAKSTLHQHKVRLAQSGQLPSNVTLKPPVDPSERFAMKERIIQAFRGCRVNGMSIRFAAKFYSIPPSTLWKYIRQFKASQPTVNPVVEPVDEEVRVIKEDIPEEPSENSSEEVDLNDFDVDAYCEQQEETVSEDGDFLISFDFETFEEYVKRELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -