Pper035985.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- At3g55350
- Assembly
- GCA_963082735.1
- Location
- OY720431.1:21074832-21086130[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-13 1.4e-10 42.4 0.0 3 43 288 328 286 330 0.90 2 4 0.11 1.1e+02 4.3 0.0 27 37 359 369 350 374 0.87 3 4 4.1e-12 4e-09 37.7 0.0 3 33 397 427 395 431 0.92 4 4 6.9e-05 0.068 14.6 0.1 10 35 805 831 799 840 0.77
Sequence Information
- Coding Sequence
- ATGAATCACCTCAAGTGGATGGGCCATACGGCAACTATCCTTGATATTCAGAAAACTCTCAAAAATGATCCATCCACCTGCGATATAACACTTGCCTGCCGAAGTAAATCAGCGAAAGCTCATCGCTTTGTACTATCATCGTGTAGCGATCTGCTACGTGATCTCCTTAGTGATGTGCCCATTGGACAGGAGGCCACCATAATAATACCCGATGTTAAAGGCAATCTGTTGGACTGTGTTTTGAGTTTCGTGTACATGGGGGAGACAAGTCTGTCCTCACCGAACTTGTCTGAATTTCTCGAGGCCATAAGTATACTTGGTATCAAGAGTGCTATCAGTTTTGAATGTGCGAACAGTAGTTCGGCcaataatagtaaaaatgtagCCGAAATGACGGAAATGGAAGAGGAACTGATGGAAGCCGAACAAGAGCAGGAAATTGTCGAAAAGGACGAAGAGGAGGATCAAACAGTCGTGGAAAACAACAGTGTACGTGAGTTGGAATTTCTTGAGGTTTACAATGAGCAAGAAAAAATCAGCTATACCATCGAGAATATCACTCCAACCAATCCCAATGAATACATTCTTACTGAAAGTTCTGGCACCTTCACTCTGACACCAAACGCAAAAATCGACGGCAGTGAAGTGGGCGCACTTGTTGAGAAAAGCGAAGAAGATAATCCCATGATGGAGCACTATGTGGGCGATCCAATAGGTGACAGCAGCCAATGCTCAAGCACAGACATTAAAGAGGACAAGTCTAGTAAGAATCTAAAAGATGAATTTAGTGAATTTCAAGCACTTAGTCCAGAGGATTCCAAGGGCTATCAAAACTTCAATGATACACAAACTGCCCGCGTAGAAGCATTGGAAAATGCAGTCCTAGCTGTGGTCGATGAGGGGATGAGTTTGCAGAAAGCCGCTATCAAGTACAACATTTCAAAGACTGTCCTCTGGCGACGAGTGAAAAAGCATCCACTATACATGAAAACGACACGTGAAAATCCACTTATAACAGCGGCATGTGAGCGCTTAAAAAACGGAGATTCTTTGAAAAGCATTAGCCAAGCGCTAGACATTCCCATGTCTACATTACATAGACACAAAGTGCGGCTTGCATCGGAAGGACGACTGCCAGAATATGTGACTTTCAAGAAACGTGGCCCAATGTCCAAGGAAATGCTAAAAGAAAAACTCACAAAAGCAGTGCAGGCATGCTTAGGCAACGGAATGTCACAGAATCATGCAGCAAATGTGTTTGATGTACCAAAGAGCACATTTCTACTACAGGCATGGATTGATATGAAAAAAGCAGTCAAAAGGAAGGTAGCTTACATAAAGTCTGCTGATGGGATGCAACCTAATGATGGAGATTTAACAGAAGAGGATCTTCGGGTGATACGAATCTATGAAACCGAAGCAGTGGAATATCCACAAGAAATGGATGAATTATCTGAGGCTATCTTCGAGGAGCATTCCATGCAAAGTATCGACGTACGTATGGAAAACAACAATATCGAATCGCTGAGTTCTGCTCAATCTTTGCCTGAAACAAGACAACACAATGTCGAAATGGAAAACTTAAAATGGATGAACCACACCGATACTATCGTTAACTTTCAAAAGTCACTGAAGGACGATCTAGATTCCTGTGACATAACTCTCGCCTTTAAAGGTAAATCGGTTAAAGCTCATCGATGTATACTATCGGCTTGCAGTACACTACTGCGTGAAGTGCTTAGAGATGTACCCACCGGTCAAGAGGCCACCATAGTAGTACCCGACACTGAAGGAAGTTTGCTGGATAGTAtattaaactttatttatatGGGCGAAACGAATATCTCCCCAACGAGATTGACGGAATTTCTAGAGGCTATCGGTAACCTTGGTATTAAGAGTCCCATTAGTTTTGATTGCCCGAATATTACTGTTGCTAACAAAGAAGACATCATGGAAGACACTGAAATCGAACAAATCGATGTGGACGACGAATTAAAGGACGAAATTATCGATGTTGACGATGAAGAGGATTTTACTTTTGTGGACCACACTGCCATAAGTCAACACGATCTAATTGAAGACAGTACTGACGAAATTATTACTACGTCCAATCGGAGCGAAAGTTTCCATACGGATCGTAGTGGTTCCTCAACGCCAACACAAATTGTGAAAACCAGTGGCAACAGTGCAGGTGTGTTAGCTGAACACCTCGATATGGACAGCCCCATGACAGAAGACTATGCTGACGATCCAATCGGTGATAGTAAACAGAATCCAAGGGTGCCACGGATTAAAAAAGAATCTTCTGACGATGATGATATTCCTGAGAATATCAATGAACCTCAAACATTCCGCGATAGAGTGAACCGATTAAGAGCGCAACAAAAGAAGTCACTTAAGCAAGCTTTTTTCGCTCACACCCATGGCGGCATGAGTTTGCGGAAGGCAGCCCTTACATACAACATAGCACGCACAGCAATCCTTCGTGAAGTGGCAAAGAATGAAAGCACTACGAGTACTATAATATTCGAAAGTAGCGATGAAGATGAGGACACTAGAAAATCTGATCTCATACGCCTTCGAAAACATATCAGAATAAAATCCAATCCAATGGATTTACCAGATTTAAaatttaagaatttatttggaaTGCATAAGGAAGCCTTTGCATATATTCTAGACGAAGTAAAAGATAAGCTACCTGAAGCAAAGCGTTCTTCGTCAGTGCCGCCAGTATTGAAACTCGCTGCAACTTTAAGGTTTTTGACTAAAGGCACCTACCAAAAGGGTATGGGAAGTGACTTTGCTTTGGGATTAGCACAACCCACGCTTAGTAAAGTCCTCAAAGATATGCTAATCGCTATAGAAACTCATCTTTGCCCTCAATGGATCAAATCAGATTATACAGAGGAGGAAAAAAGACAAGCGAAGctgtatttttataaacaagCTGGGATTCCGGGTGTTATTGGTTGTATTGGCGGCACCCATATTAAAATTTTGGCGCCCAACCAGGTGGAACAGCGTTTGTACCATAACAAGTACGGCTTTCATAGCTTAAACGCTATGATTGTTTGTGATCAACAAATGTTTATAAGGTATGTGGATGCTAATCAACCAGGAGCCAGCCATGACTCCTTTGTTTGGGACTCTAGTGAACTTCGCGAAACTCTAAAAAGAAATTACCAAAGGGGCGAAAAAAACACTTGGTTGCTGGGTCATGCTGGGTATCCCCTTGAGCCATTCCTCATTACACCATTCAGAAACGCAGAGGAAGGAAGCAATGAGAGCAGCTTTAATGAGAGACATTCAAAAACAAGAAGTatatttgataaaacaattgcaGTTCTAAAGAACCGTTTCCAATGCCTTCTCGGTGAAAAACAATTGCACTACACCCCGCAAAAATCAGCTCAAATTGTCAATGTTTGTGTAGCTTTACACAATATATGCCTTCATTATAAATCAGATATAGAAGTAGAtcagaattttgaaaatgtatccAATTCAGATATAGATGCAAATATAACCACTCCCGATGATCAAGTAGCCATAAATATGCGAAACCAACTGTTAGAGGCGATTGAAAGACTTCATTAA
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKNDPSTCDITLACRSKSAKAHRFVLSSCSDLLRDLLSDVPIGQEATIIIPDVKGNLLDCVLSFVYMGETSLSSPNLSEFLEAISILGIKSAISFECANSSSANNSKNVAEMTEMEEELMEAEQEQEIVEKDEEEDQTVVENNSVRELEFLEVYNEQEKISYTIENITPTNPNEYILTESSGTFTLTPNAKIDGSEVGALVEKSEEDNPMMEHYVGDPIGDSSQCSSTDIKEDKSSKNLKDEFSEFQALSPEDSKGYQNFNDTQTARVEALENAVLAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLASEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGNGMSQNHAANVFDVPKSTFLLQAWIDMKKAVKRKVAYIKSADGMQPNDGDLTEEDLRVIRIYETEAVEYPQEMDELSEAIFEEHSMQSIDVRMENNNIESLSSAQSLPETRQHNVEMENLKWMNHTDTIVNFQKSLKDDLDSCDITLAFKGKSVKAHRCILSACSTLLREVLRDVPTGQEATIVVPDTEGSLLDSILNFIYMGETNISPTRLTEFLEAIGNLGIKSPISFDCPNITVANKEDIMEDTEIEQIDVDDELKDEIIDVDDEEDFTFVDHTAISQHDLIEDSTDEIITTSNRSESFHTDRSGSSTPTQIVKTSGNSAGVLAEHLDMDSPMTEDYADDPIGDSKQNPRVPRIKKESSDDDDIPENINEPQTFRDRVNRLRAQQKKSLKQAFFAHTHGGMSLRKAALTYNIARTAILREVAKNESTTSTIIFESSDEDEDTRKSDLIRLRKHIRIKSNPMDLPDLKFKNLFGMHKEAFAYILDEVKDKLPEAKRSSSVPPVLKLAATLRFLTKGTYQKGMGSDFALGLAQPTLSKVLKDMLIAIETHLCPQWIKSDYTEEEKRQAKLYFYKQAGIPGVIGCIGGTHIKILAPNQVEQRLYHNKYGFHSLNAMIVCDQQMFIRYVDANQPGASHDSFVWDSSELRETLKRNYQRGEKNTWLLGHAGYPLEPFLITPFRNAEEGSNESSFNERHSKTRSIFDKTIAVLKNRFQCLLGEKQLHYTPQKSAQIVNVCVALHNICLHYKSDIEVDQNFENVSNSDIDANITTPDDQVAINMRNQLLEAIERLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223508;
- 90% Identity
- iTF_01223508;
- 80% Identity
- iTF_01223508;