Pxyl018499.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000543.1:2298803-2304472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 1 10.7 1.8 1 23 396 418 396 418 0.97 2 12 0.78 59 5.1 0.3 2 23 426 448 425 448 0.93 3 12 0.052 4 8.8 3.9 1 23 452 474 452 474 0.96 4 12 0.018 1.4 10.2 1.2 1 23 479 502 479 502 0.96 5 12 0.036 2.8 9.3 1.6 1 23 506 529 506 529 0.97 6 12 0.97 74 4.8 0.1 6 22 546 562 542 566 0.87 7 12 0.00044 0.034 15.3 1.0 2 23 580 601 579 601 0.95 8 12 7.5 5.7e+02 2.0 1.0 3 14 616 627 615 637 0.84 9 12 0.02 1.5 10.1 1.8 2 23 651 672 651 672 0.96 10 12 0.00014 0.01 16.9 0.6 2 23 679 700 678 700 0.96 11 12 0.00013 0.01 16.9 2.5 1 23 706 728 706 728 0.97 12 12 3.6e-05 0.0027 18.7 0.9 1 23 734 757 734 757 0.98
Sequence Information
- Coding Sequence
- ATGGTCTCGTATTGTTGCGTGAAAGACTGCCACAACAACAGCAGCGAAAAAAAGAGGAGGTCTCATACAGTAATCACATTTCATGCTTTCCCCACCAACCCAGAGGCTAGGTCGAAATGGTTGAAAGCGATTGGCCGGCCCAGCTGGGATCCCCCTAACCACGCGAGGGTATGCAGCGCCCACTTCAGCAGAGAGCAGATCAACCGCGAGCACCAGCGCACCCGGCTCAAGGACGACGCCTGCCCAGTCAGGGACCTACCTGCCAACTCATACTTCGAGGCCACAGAGATGGAAGTGTGCCGCATTTGCCTTGCTACTGACGTGAAGATGTACAGCCTGCACGAGGAGGTGCTCAAGACATGCTTCAAAGCCATTGTTGGGCTTAATAAAGACATTGAGGGCCTCCCACAGTTCGTGTGCTACGAGTGTGCGTTCCAGCTGCTCAAATGCTACAATTTGATTGAGAAGAGCATCATAGCCAAGGCAACACTGCTAAAAATATTCTCAGAAAATGGGGAAGTAACAAAACACTTAGTAAGAAATATCAACAGAACTGAACTGAATCTAAAATCTAGTCTCAAAGTAAATAACATAGTTCCTAAAACTATTTTTGACTTGCAATATGATGATGATCTCAAAAAATACATTAATACTTTGAGAACAGAAGAAAATATTTGCAAGAATGAAGAAAAGAGTACAACTAATGATATTTTAAATAGTATTAAACTAGCAAAGCAAAATACATCTAAAAGAAAAGCTGATAAAGATGAAAATGTATCAGTAGGGTACAAAATAGAAGTAAACTTAGACCTAAATGATGAAGACTACAAATTAGAAGAAAGTTATCCAGAAAATAACATCATACCAAATAACTTTGTTAATATCAATGACAATGTTAAAGAAGACAATTCATGCGATTCTGATGGCTCAGATTTAATAATGGATGAACCAGACTACAATTCTGACTCAAAAGACAACAAAACATTTGAAATAGAACCAATAAAGGCTATCAAGAAACCAGTTGCAAAAGTTAAGAAAAAAGCAACCAAATCAAAACTGATAAATGGTTTGACACCAGATGAAGTGGAAATGCAGAAATACTTTGACATAGCGATTCTAACACTAGAAGAGCAGATTGAAGACAGGGAAAAGATGAAAGAGTTGCCGGCTTACAGAGATGCGTTGTACAAGTGTGAAGTTTGTTACAAGACATACTTGCACCCGGATGCTTACAAAATGCACATGGACAACCACAGTCCCAAGCATGGTCCAGTTGAGTGCCCTGTTTGTAGACTGCGGTATAAAACCGATACATTAGCCAGGTCCCACGCCAACCGCACGCACGGCAAGAAGTTCCACTGCAAAACGTGCCCCAAAGTCTTCACCAACGTGCGCATCGCGAAGAAACACCAGAAGCGGCACGACGGCTACAAGTACACGTGCGAATCCTGCGACTTCTCCACTATACATGAGTCGGCGTACAACACGCATGTTCGTGCACGCCACGCGGGTAGATACACGTGCGTGAGGTGTGGACACGCGTGCGCGAGCGAGAAGGGGTTGAATTTGCATGTGCAGCGGAGTCATGGAGGGAGTGTCGGGCAGCAGGAGTCGTCGGAGTCCGCCTGCGCCCCGTGCGACTTGCGGTTCAGCTCAGTGGACGAGTGGCGCCGACACGTCACCACCGACGCCAGGCATCTTGGTAGTGGTGCCCCCCCAACCACGGACCCGGCCACCACGTGCCCCCACTGCGGGCTGGTCTGCGCGTCCCCGCGACAGCTGCAGTCGCACGTGGGGAGCCACGCCGCGCCGCCCGCGCAGACTAGTGTGGTGTACCCGAGATTGTGCCAGCATTGCGGCGAAACCGTGAACAACCGCAAGGAACACTACTTCCACGTGCGCAAGCAGCACCCGGCGCTGCGCGGAGACTACCAGCCGCTCATCACCGCCGTGTGCGACACCTGCGGCAAGGGCTTCCAGAACACCACAAAGCTCCACCTCCACGAGCTGCGCCACGGCGGCGTGGGCACTGTGCGTTGTCCGCACTGCCCCAGACTGTTCTACGACAAGTACCAGCTGGCGAGACACGCGACAGTGCACAGCGACCGCCGCCCGCATCGGTGCGGCTTGTGTAGCAAGAGTTTCAAGCTGAGGAGCAATCTGGATAGACACGCTAAGGTCCACAGCGGCGCGACCCCCTACCCCTGCACTCTCTGCGGCAAACAGTTCCGCTACTCGTCCAGCCGCAACCTGCACGTTCGTACTGTGCACTACAAGCAACCCCACCCGCCCAGGAAGAAGAGGACGAAGAATGTAGCTAGCTACGAGTGA
- Protein Sequence
- MVSYCCVKDCHNNSSEKKRRSHTVITFHAFPTNPEARSKWLKAIGRPSWDPPNHARVCSAHFSREQINREHQRTRLKDDACPVRDLPANSYFEATEMEVCRICLATDVKMYSLHEEVLKTCFKAIVGLNKDIEGLPQFVCYECAFQLLKCYNLIEKSIIAKATLLKIFSENGEVTKHLVRNINRTELNLKSSLKVNNIVPKTIFDLQYDDDLKKYINTLRTEENICKNEEKSTTNDILNSIKLAKQNTSKRKADKDENVSVGYKIEVNLDLNDEDYKLEESYPENNIIPNNFVNINDNVKEDNSCDSDGSDLIMDEPDYNSDSKDNKTFEIEPIKAIKKPVAKVKKKATKSKLINGLTPDEVEMQKYFDIAILTLEEQIEDREKMKELPAYRDALYKCEVCYKTYLHPDAYKMHMDNHSPKHGPVECPVCRLRYKTDTLARSHANRTHGKKFHCKTCPKVFTNVRIAKKHQKRHDGYKYTCESCDFSTIHESAYNTHVRARHAGRYTCVRCGHACASEKGLNLHVQRSHGGSVGQQESSESACAPCDLRFSSVDEWRRHVTTDARHLGSGAPPTTDPATTCPHCGLVCASPRQLQSHVGSHAAPPAQTSVVYPRLCQHCGETVNNRKEHYFHVRKQHPALRGDYQPLITAVCDTCGKGFQNTTKLHLHELRHGGVGTVRCPHCPRLFYDKYQLARHATVHSDRRPHRCGLCSKSFKLRSNLDRHAKVHSGATPYPCTLCGKQFRYSSSRNLHVRTVHYKQPHPPRKKRTKNVASYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01222536;
- 90% Identity
- iTF_01222536;
- 80% Identity
- iTF_01222536;