Basic Information

Insect: Plutella xylostella
Gene Symbol: RREB1
Assembly: GCA_905116875.1
Location: CAJHNJ020000356.1:4948948-4961122[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.02 1.5 10.1 0.4 2 23 95 117 94 117 0.95

2 12 0.9 69 4.9 2.4 1 21 146 166 146 167 0.86

3 12 0.024 1.8 9.9 0.1 1 23 296 318 296 318 0.97

4 12 0.0018 0.14 13.4 0.5 1 23 327 349 327 349 0.99

5 12 0.00079 0.06 14.5 2.0 1 23 355 378 355 378 0.97

6 12 0.01 0.77 11.0 1.0 1 23 727 750 727 750 0.96

7 12 0.00027 0.02 16.0 1.3 2 23 948 969 947 969 0.97

8 12 0.027 2.1 9.7 5.3 1 23 975 998 975 998 0.97

9 12 0.23 18 6.7 1.4 1 23 1032 1056 1032 1056 0.90

10 12 0.031 2.4 9.5 0.2 1 23 1083 1106 1083 1106 0.92

11 12 0.024 1.8 9.8 0.3 2 23 1146 1167 1145 1167 0.92

12 12 0.03 2.3 9.5 5.3 1 23 1173 1195 1173 1195 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.02	1.5	10.1	0.4	2	23	95	117	94	117	0.95
2	12	0.9	69	4.9	2.4	1	21	146	166	146	167	0.86
3	12	0.024	1.8	9.9	0.1	1	23	296	318	296	318	0.97
4	12	0.0018	0.14	13.4	0.5	1	23	327	349	327	349	0.99
5	12	0.00079	0.06	14.5	2.0	1	23	355	378	355	378	0.97
6	12	0.01	0.77	11.0	1.0	1	23	727	750	727	750	0.96
7	12	0.00027	0.02	16.0	1.3	2	23	948	969	947	969	0.97
8	12	0.027	2.1	9.7	5.3	1	23	975	998	975	998	0.97
9	12	0.23	18	6.7	1.4	1	23	1032	1056	1032	1056	0.90
10	12	0.031	2.4	9.5	0.2	1	23	1083	1106	1083	1106	0.92
11	12	0.024	1.8	9.8	0.3	2	23	1146	1167	1145	1167	0.92
12	12	0.03	2.3	9.5	5.3	1	23	1173	1195	1173	1195	0.97

Sequence Information

Coding Sequence: ATGCAGGGGGCGCCAACCGCCGCCGCCGCCCCCGCGGCCGAGCCCCCCAGTCAGCAACATATCAAAACAGAAGACGTGATCATTGAAGCCAAGATCGAGGCGGAGAACGAAGAGGACATCAAGATGGAGGTCCGGGAGCGGGCGACGCGCACCGTCAGCATCGACAGTGATAACCGCTCCGTCAGTGATGACGAGGAGGCGCGCCGCAGCAGGAAACGCGCCGCCTCCCCCTCAACCCTCTCCCCACGCCCGCTCAGCACCATCAAGCGCACCGCTCGCCTGGAGTGCCCGCACTGCCGGCAAGCGTTCGACTCTACCGATGCCCTCGACCTCCACCGCTTCACGGCCCACGGAGACGACTCCCGCCCCAACTACAAAGACTACCCGGACTTCAGGAAGTTCGCTGACATCACCAGGAGCATCCCGCGGGAGAGGTACCGCTGCCATCACTGCACTCGCGACTTCCCGTGCGCGGAGGCCCTAGATGTCCACAGAAAGTCCTGTGGGACTCCAACACGCACAGTTGTCACCCCCGAACGGGACAGGAGAGAGGATTTCTTCGCCAAATTGGATCTTAGAAACCGATCCTTTGGCATTCCTGGAACTTTAACACCGCCTATGGAGAGATTCACTCCTAAGTTCGAAGATAGTTCGTATTCTGAAAACGGTCTTCGTCATTTAGATGCTGCGAGAGACCTGGCGGATATACAGTCCATCCTGCATGTGACATCGGCTGGTAGTTTGCTTGAAAGACTAACAGGGACTAGAGTGCCGCTTGAAAGCTCTGTCTTGACGCCGCCTGACACTATTCTAAAGGACCGAGATCAGGAGGAGACGCAAGACAGCTTCGCGGCAGAGTTCCGACGAATGAAATTGCGTGGAGAGTTCCCTTGTAGGTTGTGCCCAGCCAAGTTCCCCAATCTGCGAGCTTTGAAAGGACATAACAGAGTTCATCTAAGTGGAAACGGTCCAGGCCCCTATCGGTGCAACATGTGCCCTCATGCATCTTTAGATAAAGCTGCTCTTGTGCGGCACATGCGAACTCACAACGGAGACCGACCATATGAATGCGCTGTGTGCAATTATGCGTTTACTACTAAAGCGAACTGTGAGAGGCATCTAAGAAACCGCCACGCAAAAGTTACCCGAGAAGATGTTAAACGCTCCATTATTTACCATCCCTCTGAAGACCCAAACAATGATGAAGTCAACTCAAAAATATCTCGTGAAGAAGTGAAGAGATCGCTTGCTTTCCACACTCCAGAAATTATTGAACGACGGAGCGAGTCCACTGGCCGGGACACTCCTCTATCTCACTTCACCCCGAACTTTATTACTGAAAGACATCCGGTCACTTCTTTGACACCAACTTTGCCGGAGACTCCCTCACTGACACCAAGGGACACTGAAACAATCATACCCCGAATCAAAGTGAAAGGCATTGGTCAGTTGACTCAAATACCAGAGTTTCGTCCTCCTGAAATCAATTACAAAAACAACGAGGAACCAGGTCACTACGATGACGATGCCCCAGTCGATCTCTCCACCAATGATAATAACAACTGCGATGTGCTGGACCTCAGCAAGAAGAAACGTGATACTGATGATGATGAGCCGAAAAACACGCCACAGGTTTCTTTTGATACTGATGCTGCTGCAGCTGCTACTGCCTTCGAAAAAACGAGATTCCTGCTAGCCCATCATAGACTGTTCGATAACCCTTTACCAAAGATCGACCCCGCCTTTTATGCCACGCAACTATCCCAGATCTACGCAAGTTCAATGTCCGGATTACCTGGTCTACCAATACCCCCTTCTTTTCCTCTTAACCCGTACTTTCTTCAAACCTCTTTTTTTCCTCAACCCACTGATACCCAAGAACTTGCCGAAATAAAGCAACGGATACAAAAAGAGATCATTCGTGGTCTGAGCATGTCTGGCGGAGTTCTCATAACTCCAGAAGCTAAAACTCAACCGAAGCAGGAGATTATAGAAGAAGATGAGAAACCAATAGTACAACCACCTCGTGACCCGTCACCTGTACCACCACCGCGGTCTGTGTCTCCCGCGCCAGTACCCACTAGCATGGTGCCACAGACAGATTCTGTGAAAATGGTCATAAAAAACGGAGTCCTGATGCCAAAACAGAAGCAAAGGCGTTACCGAACTGAAAGACCTTTTTCTTGCTCTCAATGCGCCGCTAGATTTACACTGAGGTCGAATATGGAACGCCACGTGAAGCAGCAACACCCTCAACACTGGAGCATCCGCCGACCGTCCCCAAGGGCGCCTCCTCCATATCCTACTTCTGACTGTTTGGCAGACCGAGTAAAGTTCGCTCTTCTAGCTCGTCATTTAGAAAACCCACTGCACCCCTCTGAACGCTCCCCTGTGCGCAGAGATTCAGATGAAGTAGCTGACAACGAAGAAGATGAAGAGGACACTTTAGTTATTGATGAGGAAGAACCAGAAGATAATCAACAATCCGATGAGCACACAGCCGCGCATAGGGCTGCAGCTGAAATTCTTCTAGCAACTCGTCAACAGGAAATTACCAAAGACTTTGATCTCAAAATCGCAGGAAATCTTATCAATAAGCCATTATCACTAACTGTTGATAAGAACGAGGACGCAGAGCAAGCACCTGTGGTGAACACTCAAGAACCCTTACCCATACCGATCGTGCCAACTCGAAGTGATGAAGAAGAAGATGAAGAGGGTCTGGTGGCTTCCACTAGTGAAGGAAATAACTCCGGCAGCGATGAAAATAAATCGGACGTGGATGCAGGAACTCAACCACCAAAGAAGAAGTCGGCGTACAGCTTGGCCCCAAACCGAGTGTCCTGTCCGTACTGCCACCGCAAGTTCCCGTGGTCCTCGTCCCTGCGCCGCCACGTCCTCACGCACACTGGACAGAAGCCGTTCAAGTGCCCGCATTGCCCCCTTCTATTCACCACCAAGTCGAACTGTGACCGTCATCTACTGAGGAAGCATGGAGGGTCAGCGCGAGCCATACTGGCCGAACCCATCCCTGACACAGTCACTCCACCGCAACCAGCCAATGATGCGTCTCGAACGGTCCCCGAGCGGCCCTTCAAATGCGCCTCTTGTCCCACCAGCACATTCTCCTCAATGGAGACGCTAAAGAAGCACATGTCTTCGAGGCACGGATTGGGAGAGACACTACCAGAGTCGCCAGCTCCGGAGACAGTTGACGATCAGGATGGTAACCCGGACGGGCTGGCGTTCAAGTGCCACCTGTGCGAGGGCTCGTTCAGCGACCGCGGCGGCGCGCTGCGGCACCTCGCTGCTGCCCACGCTACAGAGTACGAGCAGCTGGTCAGCAAGGGAGCCCTGGACGCCGCCAGCGACCGCAGCGAGAGCGCCGACGACGACGACCGGGGCAAGTTTCCCGACCACGCCAATAGAAAGGTGGTCTGCGCATTCTGCATCCGCCGGTTCTGGTCGGCGGAGGACCTGCGGCGGCACATGCGCACGCATTCCGGGGAGCGTCCCTTCGCCTGCGACCTCTGCCGGCGCCGGTTCACGCTGAAGCACAGCATGCTGCGCCACCGCAAGAAGCACCGGGATGACCCCACCGATGATGAGGAGGTGTCTCCGCCCCACACGCCGGTGGAGAACCTGTCTAATGGCTACCGTTACCACGACGACGACGGTTCCGGCAACGAGATACCGAGCAACGTGAACAACAACAACTCGCCGCCCGCCGCGCCCTACGAGAAGAAACTCAAAATACAAATGGCGTCCCGAAAATACTCCTCGGAAGCGGAAAACGACACCGAAAACAGCGGCGACCTCATCGGAAAACTGCTAGGTATCCCAGACAAAACTATCATCAACAAACTCCTCTCGTCGGCTGACGAAGCAGCCAAGTTCTTGGGCGTAAACAAATGA
Protein Sequence: MQGAPTAAAAPAAEPPSQQHIKTEDVIIEAKIEAENEEDIKMEVRERATRTVSIDSDNRSVSDDEEARRSRKRAASPSTLSPRPLSTIKRTARLECPHCRQAFDSTDALDLHRFTAHGDDSRPNYKDYPDFRKFADITRSIPRERYRCHHCTRDFPCAEALDVHRKSCGTPTRTVVTPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFEDSSYSENGLRHLDAARDLADIQSILHVTSAGSLLERLTGTRVPLESSVLTPPDTILKDRDQEETQDSFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGNGPGPYRCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKISREEVKRSLAFHTPEIIERRSESTGRDTPLSHFTPNFITERHPVTSLTPTLPETPSLTPRDTETIIPRIKVKGIGQLTQIPEFRPPEINYKNNEEPGHYDDDAPVDLSTNDNNNCDVLDLSKKKRDTDDDEPKNTPQVSFDTDAAAAATAFEKTRFLLAHHRLFDNPLPKIDPAFYATQLSQIYASSMSGLPGLPIPPSFPLNPYFLQTSFFPQPTDTQELAEIKQRIQKEIIRGLSMSGGVLITPEAKTQPKQEIIEEDEKPIVQPPRDPSPVPPPRSVSPAPVPTSMVPQTDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCAARFTLRSNMERHVKQQHPQHWSIRRPSPRAPPPYPTSDCLADRVKFALLARHLENPLHPSERSPVRRDSDEVADNEEDEEDTLVIDEEEPEDNQQSDEHTAAHRAAAEILLATRQQEITKDFDLKIAGNLINKPLSLTVDKNEDAEQAPVVNTQEPLPIPIVPTRSDEEEDEEGLVASTSEGNNSGSDENKSDVDAGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTVTPPQPANDASRTVPERPFKCASCPTSTFSSMETLKKHMSSRHGLGETLPESPAPETVDDQDGNPDGLAFKCHLCEGSFSDRGGALRHLAAAHATEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDDPTDDEEVSPPHTPVENLSNGYRYHDDDGSGNEIPSNVNNNNSPPAAPYEKKLKIQMASRKYSSEAENDTENSGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01548272;
90% Identity: -
80% Identity: -