Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000004.1:7990942-7996628[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00046 0.035 15.2 1.3 1 23 283 305 283 305 0.98

2 10 0.016 1.2 10.4 2.3 1 23 309 332 309 332 0.89

3 10 0.6 46 5.4 3.0 1 23 339 362 339 362 0.93

4 10 0.00072 0.054 14.6 1.6 2 23 367 389 366 389 0.93

5 10 0.0054 0.41 11.9 6.2 1 23 395 418 395 418 0.95

6 10 0.00066 0.05 14.8 2.7 3 23 428 448 427 448 0.98

7 10 0.00076 0.057 14.6 4.7 1 23 459 482 459 482 0.97

8 10 1.7e-06 0.00013 22.9 1.8 2 23 489 511 489 511 0.94

9 10 0.00051 0.039 15.1 3.7 3 23 522 542 521 542 0.98

10 10 0.0019 0.14 13.3 1.4 2 23 549 571 548 571 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00046	0.035	15.2	1.3	1	23	283	305	283	305	0.98
2	10	0.016	1.2	10.4	2.3	1	23	309	332	309	332	0.89
3	10	0.6	46	5.4	3.0	1	23	339	362	339	362	0.93
4	10	0.00072	0.054	14.6	1.6	2	23	367	389	366	389	0.93
5	10	0.0054	0.41	11.9	6.2	1	23	395	418	395	418	0.95
6	10	0.00066	0.05	14.8	2.7	3	23	428	448	427	448	0.98
7	10	0.00076	0.057	14.6	4.7	1	23	459	482	459	482	0.97
8	10	1.7e-06	0.00013	22.9	1.8	2	23	489	511	489	511	0.94
9	10	0.00051	0.039	15.1	3.7	3	23	522	542	521	542	0.98
10	10	0.0019	0.14	13.3	1.4	2	23	549	571	548	571	0.92

Sequence Information

Coding Sequence: ATGTCCCAATTATTATGTCTAAACTTACAGGACTTCTATTCAGGGCAAGATATTACAAGCGTGATACAATGCCCGAAATATGTGTGCATGTGCTGCCTTGCTACCGATGTCCGGTATATCAACTTATCTAGTTGTAAACATGCACATTTTCTAAATATGTGCATTAATATAAAGGTGGAGCTACACAATCAAGTCATTTGCTATCATTGTCATAGACTCTTGATCAAGATAGAAGTATTTAGACAGCAAGTTGAAGATAGCTTATTTAAATTAACATCTCAGAAGCCAGATAATCAAAACTTAGAAAATAATCACTACAATTTAGTCTCCACAAAAATAGAAATCACAGATTCTATTAATGATTTCCTTGAAAATGGTGCACAACAAATTAACTCACAATCAGATATAGAGAATCAGAAAGATATAAATGATATTTATGAAAATATTTGTAAAATAGACACAAAAACTGAAGAAGTAGACAGTCACAATGATTCTGATTATGAGCAACCTGCACTGTTTATAAAAGAAGAATATTACAAAGAACCAGCTGCAGGTACCAGTGAAGATACCAAACTCAATGATGAAAGAATTAAAATTAAAATGAAAAGAACTAAAAAGAAAGGAAATAAAAACACTGAATTGCCTGAGAACAATGAGTTCAAATACAAAGGGAAAATCAGAATAATTGAACTAACTGAAGCACAAGTGCAGGCTGAAAGAGCTAAGCAAGCAAGTAGTGAGAAATACTTGAGGTTACCGTACAAGTGTGAAACCTGCATTCTTGGATTTGATTTTGATAATACATTTAATGAGCATAATGAAAAGAAACACCCTAAAATAGGCAGTTTTACATGCAATATATGTAAATCTGTGTTAAACACACAGTCATCATACAGGCTTCACATAAGAAATCATTATAAAAGATATGAATGTGAGCAATGTGGCAAGCACTACTCTAATTTACATCCAATTTTAAAACACTACAGTGACATGCATGAAAAACTGGAAACAGCTTATAAATGTCCACATTGTGATGACTTTACTACCAACAGTTACCGAGCCTACAGATATCATATTGAGAAGCACAAAGGGCAAAAGCAGTGTGCGGAGTGTGGCAAAACCTTCTCCAATACATCTGGCCTGAGGTGCCACATATATTCAGTGCACAAACAAACGGGTGCATTCAAGTGTGTGCCGTGTGACAAGGTGTTCAGGTACCGGTCCAGTCTGAAGTCGCACCGTCACTCGTGCCACGGGGAGGCGGCGGAGGAGCAGCCCTTCTGCGGGGACTGCGGCACACACTTCAAGACCGTGGGCAGCTATAAGAACCACCTGAAGAAGCACAAGAACCACAGGAATGAGAATGATATTAAATATCAATGTGATATGTGTGGGGCTAAATTTATTTTGAAGCATCATCTGGTGGATCACATGAAACATACACACTTAAATATATCCGATGCGAAATGCCTGATGTGCGATAAGTCATTCAAAAGCAATTATAATTTGAAGAGACATATCACCCAAGTCCATGAAAAGACACCACTACCGAGGAACAAGATATGCGATCATTGTGGAAGAGGATTTACGACTACCCACATTTTGCGCACTCACATACGGACGCATACGGGAGAGAGACCTCTGCAATGCGACCACTGCCCCGCGACATTCGCGCACTCAGCCTCTCTCTACACACATAACAAACTTGTACATAAACGACTGAAAAAAATACAGTGA
Protein Sequence: MSQLLCLNLQDFYSGQDITSVIQCPKYVCMCCLATDVRYINLSSCKHAHFLNMCINIKVELHNQVICYHCHRLLIKIEVFRQQVEDSLFKLTSQKPDNQNLENNHYNLVSTKIEITDSINDFLENGAQQINSQSDIENQKDINDIYENICKIDTKTEEVDSHNDSDYEQPALFIKEEYYKEPAAGTSEDTKLNDERIKIKMKRTKKKGNKNTELPENNEFKYKGKIRIIELTEAQVQAERAKQASSEKYLRLPYKCETCILGFDFDNTFNEHNEKKHPKIGSFTCNICKSVLNTQSSYRLHIRNHYKRYECEQCGKHYSNLHPILKHYSDMHEKLETAYKCPHCDDFTTNSYRAYRYHIEKHKGQKQCAECGKTFSNTSGLRCHIYSVHKQTGAFKCVPCDKVFRYRSSLKSHRHSCHGEAAEEQPFCGDCGTHFKTVGSYKNHLKKHKNHRNENDIKYQCDMCGAKFILKHHLVDHMKHTHLNISDAKCLMCDKSFKSNYNLKRHITQVHEKTPLPRNKICDHCGRGFTTTHILRTHIRTHTGERPLQCDHCPATFAHSASLYTHNKLVHKRLKKIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -