Pxyl025101.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000522.1:808515-813673[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.031 2.4 9.5 0.3 1 23 272 294 272 294 0.98 2 10 2 1.5e+02 3.8 2.4 1 23 301 323 301 323 0.96 3 10 5.3e-05 0.004 18.2 1.8 1 23 353 376 353 376 0.98 4 10 0.00025 0.019 16.1 0.3 2 23 381 403 380 403 0.94 5 10 3.2e-05 0.0024 18.9 1.5 1 23 410 433 410 433 0.95 6 10 0.4 30 6.0 2.0 3 22 445 464 444 468 0.91 7 10 0.0012 0.09 13.9 0.3 1 23 473 496 473 496 0.96 8 10 0.0003 0.023 15.8 0.5 1 23 502 525 502 525 0.96 9 10 9.1e-05 0.0069 17.4 4.9 1 23 535 557 535 557 0.98 10 10 0.0011 0.084 14.0 1.0 1 23 563 586 563 586 0.96
Sequence Information
- Coding Sequence
- ATGTTAAACGCAAGTAGCACAAACGTATTGCAAGCTCCCAGCATACTGTCTCTTATAAGAGCCAACTGTTGCACCACATGTCTGAGCAGCGACCGCCGTCTCTATCCAATCAAAGCATATCTCCCTGAACTAAGATATCTCTGCAAAGAAGTTTCTTTTTCAGCTGACAACACAATATGTTATGAGTGCAAAGCTATCCTAACAAAAATACTGACATTCAGACAGAGAGCAGTAGAAGCTATGAATGTTTTACTCAGCTTGGGACAAGTAAATTCACTGAAAAAAGGTGCGGAAATCAATATTGACAGCCTCTCATCTCTAACTTGTTCCAATATTAAAAACACATTTGATGCTGAATATGACCTGACTTATAACATCATTCCAATTGAATTGAAACAAGAAAGTGATGAAGAAGCAAGTATTAAAATAGAAAATGTGGATATATGTGATGGCATCAGTGATGATGATGATGATAGAGAACCACTCTCGGGGCACAAGATGGAGGGATCACCAGTTGATGCGGAGAGCCCCCTGTCTCCGTGGAAAGTGGAAGCTGAGTCAGTATCAGCCGAATGTAAGGAAGAACAAGAACAGTCTGATGATAATGAGAAGCCTTCTAAATCTCTAGCCTCAGAAAATAAGCCCTTAGCTTCACGAAAACTCAGCAATAGCTTCATTTATAGCAATACCGACCAGCCCTCGTCATCACTAGCTGAGAATGAGCGTGCGTACGACATAAAAACATTCAGTAGTGATGCAGAACTGACTGCATACAGGGAGGCCAGTAAGAAACCGACCTTGGCTGGCAGAGTTTACAAATGTGAAACGTGCATTATTGCATTTGCGAAAAAGGAATTATTTGACAAACACATGGAATTGCATGATAAGCAAACGGGTCCATTTATGTGTCGTTTCTGTGAACTGAGGTTTACATTGAGAAGCGCATGTGAAGAACATGTAAACTCTCACTACAGACATTACACATGTCGCTTCTGCGCCTATCGTCACCACAGAGAGTCGCAAATGCAATTGCACATACATCGATACCACAAGGCATACGAGTGTGGAGAATGCAATATTAAATTTACCCGTTATTATATGTACAACAAGCATTTGAAGAGAGTCCACGGGGAAGTGATACAATGTGATTTTTGCAGCAAAATCTTTACCGCAAAGGAAGCGCTTAAAAGACATATTACTAACATTCATCAGGGCCTCGCGCCTGTGTACGAGTGCAATGTTTGCGAGAAGAAATATAAATCCAAAGTAAATTTCAAAAATCACACAAAAGCTGCCCACAGTACCAACGGGGACGCCGCGCCGCCGGCGTACTGCGTCGAGTGTAAACAACATTTCAAAAATGAATCTATATTGAAACTTCATCTGCAGATGTCCAAGAAACACGCGGCGCCCAGGTACGAATGTGACCACTGCGGTGCTAAAAGCGTCAACAAAGCAGGTCTTCAGTATCACATAGACTCCACACATATGAAGATTCCTAGATACGAGTGTGAAACGTGCGATCAGAAGTTTATAACAGTCATTTCCTTGAGGCGGCACAAACAAAATGCCCACGGAGGCAAGAAGGCAGCGGTCAAGAAACACGTGTGCCATGTGTGCGGAAAAGAATTTACGGTCAGAAAATGTCTAGAAGAGCACTTGAACACCCACTCCGGGCTGCGTCCGTACAAGTGCAATGTGTGCGGAGATACATTCGCGTACAGTGCCTCGCTCTACACACACAAAAAGCTCAAGCACTTGAAAATAAAACCTGAGTCCTGGAAGAAGAAGAAGAAGACTGCCAATTAA
- Protein Sequence
- MLNASSTNVLQAPSILSLIRANCCTTCLSSDRRLYPIKAYLPELRYLCKEVSFSADNTICYECKAILTKILTFRQRAVEAMNVLLSLGQVNSLKKGAEINIDSLSSLTCSNIKNTFDAEYDLTYNIIPIELKQESDEEASIKIENVDICDGISDDDDDREPLSGHKMEGSPVDAESPLSPWKVEAESVSAECKEEQEQSDDNEKPSKSLASENKPLASRKLSNSFIYSNTDQPSSSLAENERAYDIKTFSSDAELTAYREASKKPTLAGRVYKCETCIIAFAKKELFDKHMELHDKQTGPFMCRFCELRFTLRSACEEHVNSHYRHYTCRFCAYRHHRESQMQLHIHRYHKAYECGECNIKFTRYYMYNKHLKRVHGEVIQCDFCSKIFTAKEALKRHITNIHQGLAPVYECNVCEKKYKSKVNFKNHTKAAHSTNGDAAPPAYCVECKQHFKNESILKLHLQMSKKHAAPRYECDHCGAKSVNKAGLQYHIDSTHMKIPRYECETCDQKFITVISLRRHKQNAHGGKKAAVKKHVCHVCGKEFTVRKCLEEHLNTHSGLRPYKCNVCGDTFAYSASLYTHKKLKHLKIKPESWKKKKKTAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01222829; iTF_01222878;
- 90% Identity
- iTF_01222829;
- 80% Identity
- -