Pxyl023184.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- ZEB2
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000565.1:2609854-2619984[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.42 32 5.9 0.1 1 23 248 271 248 271 0.93 2 15 0.00093 0.07 14.3 1.6 1 23 278 300 278 300 0.98 3 15 3.6 2.7e+02 3.0 0.4 1 21 304 324 304 327 0.84 4 15 0.15 11 7.4 0.1 2 22 339 359 338 359 0.94 5 15 0.0044 0.33 12.2 1.4 1 23 363 385 363 385 0.98 6 15 2.2 1.7e+02 3.6 0.5 2 22 393 412 392 416 0.89 7 15 0.0055 0.42 11.8 1.3 1 23 424 447 424 447 0.92 8 15 0.14 11 7.4 2.0 1 19 453 471 453 476 0.91 9 15 3.4e-05 0.0026 18.8 0.3 2 23 489 510 488 510 0.97 10 15 0.0045 0.34 12.1 1.0 1 23 516 539 516 539 0.97 11 15 0.053 4 8.8 1.4 1 23 607 630 607 630 0.97 12 15 0.21 16 6.9 3.3 3 23 648 669 646 669 0.90 13 15 0.00019 0.015 16.4 3.4 1 23 675 697 675 697 0.98 14 15 0.00012 0.009 17.1 2.8 2 23 704 725 703 725 0.96 15 15 0.016 1.2 10.4 1.6 1 23 734 757 734 757 0.97
Sequence Information
- Coding Sequence
- ATGAATCAGTCTTGCGTATTTTGCCTTTCACAAGATAGATATTTACTGCCATTGGACACATCTTCCTATCTTACTGTTTACCCAAGTTTTAAAGAAGATATTAAAGAATACATACATCATCTACAAGCACAAAACTTACTGAAACTATGCTGGGAATGTCAAAGGAAAGTTATGAACATCAAGAAATTTATGGAAGCAGCCCAGAAATGTGCACACACACTCAAAATGTTTTTGGAGTTTCCTACAGGGGATCTTCCAAAATCAGAATCAAGGCTACAAATAACAACAGCAGACATTATAGACATATCCCCTGTTTCTGTGATAGGAACTATGTTGGAGGAGCCACCTAAAATTGAACAAAACATTGATGAATTGGATGTGAAATTAACTGTGGAACCGTTAGAACCAGAGATACAGACTAATATAAACTTGGATGTCATTAAAATAGAAGATACTTTTGATGACAATTCTACCCATTATGGTAACACATGCTTGGATGATGATTCCGATGATGATGTACCTCTCATTGTGAAAGCTACAGCCCTGAGTCCCTTGAAGACTAGGAAATCTATTAAAAAACCAAAGAATACAAAAAGAAAACAAATTCGTAAAGGAAAGAAACAGAAGCCACTAATACCGCTTCCACTCAAATACACGGAGGTATGGGCGTCCACGGAGCAGGCTATGCGCTGGCACCGCGAGGAGCTGCGGCGCGCGCGAGAGGCGAGCTTCAGCTTCGTGCACGAGTGCGACGCGTGCGAGAGACTGTTCGCCGAGGAGGAGGAGCTGAACACACATGTACAAGACACGCACTCTGAGGAGGCTGGCCAGTATACGTGTGATATGTGCTTATATCGATTTCCGGATCAAACCAAGCTACACGAGCACATGCAGGCACACTACGTCTTCTACAAGTGCAAGGAGTGTGCCTTCGAGAGCAGAATACTAGAGGAAATGCAGAAACATGTCACAGATACGCATACTGTGATAGCTCCTGATAAAAATGAGGTGGTCGTGTGTAAAAGGTGTAAAAATGAATTTGGATCCGAGATAAAGTTAAAAGCCCACATGTTGACGTGTAAAACCTACAAGTGTGTAGACTGCAATGAGACATTCCCGGCGGCGCGCGCGTACCACCAGCACCGGCAGAAGCACCGCCTCGACCCTGACGGCATCTACTGCGAGGTGTGTAAGATCTACTACAAGGCGTCGTGGTACAAGAAACATCTGCTAACAAGCACGAAGCACGTGTCACGGGACTCTTTTAAGTACGAGTGTGAAATATGTCATCTAAAATTCCCGGCATCATCTCGCCTGAAACAGCATTTGTATGGCTTCCACAAGCGACCCGGCCCGTTCCCTTGTGAATTGTGCCCTCGGTCCTACTTCAATAAGTTCAGATTGGTTCGGCACTGCGCATCAGTTCACAAGATTGGTACTGTAACACAGAAGGAGAAGAATAAAATGTGTGAAACGTGCGGGAGAGGATTTGCATCAAACACCGTACTAGCGAACCACATGCGCACGCACTCGGGCGAGCGTCCGTACCGCTGCGGCGACTGCCCCGCCGCCTTCGCGCACCACGGCGCCTACTACACGCACGTGAAGAGATTGCACGGGAAGATTGTTGATAGATATGGAACGGTGACGCGCGCTGAGAAGTCCGTACCGCTGCGGCGACTGCCCCGCGGCGTCGCGCACCACGGCGCCTACTACACGCACGTGAAGCGGCTGCACGGGAAGGTTGTTGATAGATACGGCACGGTGACGCGCGCTGAGAAACGCACGTTTCACGATAGCCACGTGTGCTTAGGTCCGTACCGCTGCGGCGACTGCCCCGCGTTGTTCGCGCACCACGGCGCCTACTACACGCACGTGAAGAGATTGCACGGGAAGATTGTGGATCGGTACGGGACGGTCACGCGCTCTGAGAAGGTGTGCTGCGAGGCGTGCGGCAAGGAGTTCAGCGCCAAGTGCAAGCTCAAGATACACTACGACTACTTCCACCTCAAGAAGACCAAGTTCCAGTGCGAGACTTGCGACAAGTACTGCCGCACGGCCGTAGACCTCAAGAAGCACCGCAACCTGCACGCCGACGCCGCGCCACTGCCCTGCGACACTTGTGGGAAGACGTTCAAGACCCGAGGCGCCCACACCCGCCACATGAAGAAACACGGCCTGACCGCCGGCGACGGGCCGTTCAAATGTCGCTCTTGTGACGCAGAGTACAGCGTCCGAACTAACTTGTACCAGCACTACAAGGTCAAGCACCTCAAGCTGAAACGCAGCGATCGGATCACCATTAAGAATCTGTTTAATCCGGATAAGGAAATAGTGGTTTTGCCGTCGAAGAAGATGTTTGAGAACTCTCAGTGA
- Protein Sequence
- MNQSCVFCLSQDRYLLPLDTSSYLTVYPSFKEDIKEYIHHLQAQNLLKLCWECQRKVMNIKKFMEAAQKCAHTLKMFLEFPTGDLPKSESRLQITTADIIDISPVSVIGTMLEEPPKIEQNIDELDVKLTVEPLEPEIQTNINLDVIKIEDTFDDNSTHYGNTCLDDDSDDDVPLIVKATALSPLKTRKSIKKPKNTKRKQIRKGKKQKPLIPLPLKYTEVWASTEQAMRWHREELRRAREASFSFVHECDACERLFAEEEELNTHVQDTHSEEAGQYTCDMCLYRFPDQTKLHEHMQAHYVFYKCKECAFESRILEEMQKHVTDTHTVIAPDKNEVVVCKRCKNEFGSEIKLKAHMLTCKTYKCVDCNETFPAARAYHQHRQKHRLDPDGIYCEVCKIYYKASWYKKHLLTSTKHVSRDSFKYECEICHLKFPASSRLKQHLYGFHKRPGPFPCELCPRSYFNKFRLVRHCASVHKIGTVTQKEKNKMCETCGRGFASNTVLANHMRTHSGERPYRCGDCPAAFAHHGAYYTHVKRLHGKIVDRYGTVTRAEKSVPLRRLPRGVAHHGAYYTHVKRLHGKVVDRYGTVTRAEKRTFHDSHVCLGPYRCGDCPALFAHHGAYYTHVKRLHGKIVDRYGTVTRSEKVCCEACGKEFSAKCKLKIHYDYFHLKKTKFQCETCDKYCRTAVDLKKHRNLHADAAPLPCDTCGKTFKTRGAHTRHMKKHGLTAGDGPFKCRSCDAEYSVRTNLYQHYKVKHLKLKRSDRITIKNLFNPDKEIVVLPSKKMFENSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -