Pxyl023180.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000565.1:2555393-2569231[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.71 54 5.2 0.1 1 20 354 373 354 377 0.91 2 15 9.1e-05 0.0069 17.5 0.6 1 23 384 406 384 406 0.97 3 15 3.2 2.4e+02 3.2 1.1 1 23 410 433 410 433 0.88 4 15 1.2 95 4.4 0.5 2 20 437 455 436 457 0.91 5 15 0.0087 0.66 11.2 2.8 1 23 461 483 461 483 0.99 6 15 0.2 15 7.0 0.4 2 22 491 510 490 514 0.92 7 15 0.072 5.5 8.3 0.6 1 23 522 545 522 545 0.91 8 15 0.0086 0.65 11.2 1.9 1 23 551 574 551 574 0.91 9 15 0.00037 0.028 15.5 0.6 2 23 590 611 589 611 0.96 10 15 4.1e-05 0.0031 18.6 0.0 2 23 618 640 617 640 0.93 11 15 0.095 7.2 8.0 3.1 2 19 655 672 654 674 0.95 12 15 1.9e-05 0.0014 19.6 1.7 1 23 684 706 684 706 0.98 13 15 0.024 1.8 9.9 0.1 3 23 711 731 710 731 0.93 14 15 0.0032 0.24 12.6 1.0 1 23 790 813 790 813 0.90 15 15 4.5 3.4e+02 2.7 2.5 1 23 820 839 820 839 0.72
Sequence Information
- Coding Sequence
- ATGATACAAGCCTGTGTTTTTTGCCTTTCACAAGACAGGGATCTGTTGATGATTGATGAATCACTGTACTTCTCTGTTTATCCAAGTTTTAAAGAAAAAAACAACGAATACATAAACTACTTAAAGGCAGAAAATTTACTAAAACTATGCTGGGAATGTCAAGGCAGGGTTACCAATTTCAAACAGTTCTTGGATACAGCAGAAAGAAGTCTAAATACTTTGGAAATGGTCATGGTTCTTCCTTCAGGGGAACTACCAAATTCGGAGTCACGGCTGCACATAACTACCGCATATTGCATAGACATAGAAGGATCTATACCTCCACTGTTGCCCCCTATAGTAGAACAGAACATTGATGATGCAGACCACTCCGCTGTTGAACCAATACAACAACAGCAAAAAGACAATGATGTAAGTGTGACAGCTGTCAAACTGGAATTGAACCTAGATGAATTGGATGATAATGGTGACAGGCAAGACAGTGATACACAAGGTTCGTTTAGCAACAATAATCTAAGCAAAGATGGTGAAATCAATAATGATAATGACACAACGTCTAACAAGTATATTATTGAAGATGATCACAGACCGCCGGCTGTGTGGGTCGCACCGCTGCCCCTTATGATACCAATTTCACAGTGTAAAAGAGTATCAAAGCAAGGCAGGTCACTAGGCAAAGAATGTGATATTAAAACAATATCAAAGCAGACCAGCTTACCAGGCAAAGAAAGCATTAGAAAAATTAAGCTAAGTGACGATAATGTAAGCAAGAATGATAACATCAATAATGACAATGACACTACGTCCAACAAGCTCATTGAAGATGATCACAGTCTGCCAGCAGTGCGGGTCGAACCGCTGCCCCTTATTATACCAATATCACAGTGTAAAAGAGTATCAAAGCAAACCAGCTTACCAGGCAAAAAAAGATATATAAAAATTAAGGGGTCGCGGGCGAAGCGGCTCAAGTTCAGTAAAGTGTGGGTATCCAATGAGCAGGCTATGCGCTGGCACCGCGAGGAGCTGCGGCGCGCGCGGGAGGCGAGCCTCAGCTTCGTGCACGAGTGCGACGCGTGCGAGAGACTGTTCGCCGAGGAGGAAGAGTTGCAGAGACATTTCGGCGACGCACACTCTGAGGAGGCTGGCCAGTATACGTGTGATGTTTGTCTATATCGATTTCCGGATCAAACCAAGTTGAAAAAGCACATGGAGGCCCACTACATCAATTACAAGTGTAAAACCTGCAGCTTTGAAAGCAGAATACTGACGGAAATGCAAAAGCATGTCAGTGATACTCACCCGAATACTAAGTGCCTTAAGTGTAGGAATAAATTTGCATCGAAGGCAGAACTAGACCTCCATTTTAACTTATGCGAAACATATAAATGCTCGTATTGTAAAGTAAAGTTCCCATTCCGGGAAATGTACATGGAACACACACAGAAGCACTTGGCAGACCCTGACGGCATCTACTGTGAGGTGTGCGATGTGTTCTTCTCTCCCTCGCGGTACAAGGAGCATTTGCGAACCAACATGAAACACGTGTCCAGAGATTCTTTCAAACACGAGTGTGAAATTTGCCACAATAAATATCCGACCGCGCGTGGACTGGGGCAGCACATGGTCGGCACTCACAAGCGGCCGGGCCCCCATCCTTGCGATCTGTGCCAGAAGTCTTTCTTCAGGAAGTTTCGATTATTAAACCACCGCGCGGCGGTCCACAAGATAGGGCCTGGCAAAGTAAAGAAGAAAAGGGAGATGGATAAGATGTGTGAAACATGCGGTAAAAGATTTATGACGGCCGTGGCGCTAAGTAGCCACCGTAACAGTCACACGGGCGAGCGGCCGTGGCGCTGCCCCGACTGCCCCGCCGCCTTCACGTCATCATCGAATCTGTGGTTGCACCGCGTGAAGATCCACGACAAGACCGTCAACAGACGGGAGAATAAGCCCAACAAGTTATGTTGCGACGAGTGCGGGAAACAGTTATCCTCTCCATCAAAGCTCAAGTACCACTGCGACTTCTACCATCTGAAGAAGGCACTACCATTTCAGTGCACAATTTGTGATAAGTATTTCCGGAAGGCCACTCGGCTCCAGAAGCACGCCCGCGTGCACAAGCGCGTCCCCTGCGAGCCGTGCGGGCAGTGGTTCAAGGACGCAGAGGCGCTAAACAAGCACTTGAAGAAGCACTCCCTGCCCTCGTGGAAGGGACCCTACAAGTGTCGCTCGTGTGGCGGCACGTACAGCAACGTGCCCGAACACTACAAACTCAAGCATCTACATCTGAAAAAAGTAGACCGCGTCAGGATCAAGAATCTCTTTAATCTAGACAAGGCAGTTGAAGTTATATGGATGGATAAAAAGTTTAGTTGCGACGTGTGCGGGAAACAGTTCCTCTCTCCATCAGAGCTCAAGTACCACTACGACTTCTACCATCTGAAGAAGGCACTACCATTTCAGTGCACAATTTGTGATAAGGACGCAGAGGCGCTCGACAAACACTTGAAGAAGCACTCCCTGCCCTCGTGGAAGGAGCCAGACAAGTGTCGCTCTTGTGGCGGTTCGTACAGCAACTTGTACGAACACTACAAGCTCAAGCATCTCCATCTGAAAAAAGACGACCGCGTCAGAATCAAGAATCTCTTAAATCTAGACAAGGAAGTTGAAGTTATATGGATAGATAAAAAGTAA
- Protein Sequence
- MIQACVFCLSQDRDLLMIDESLYFSVYPSFKEKNNEYINYLKAENLLKLCWECQGRVTNFKQFLDTAERSLNTLEMVMVLPSGELPNSESRLHITTAYCIDIEGSIPPLLPPIVEQNIDDADHSAVEPIQQQQKDNDVSVTAVKLELNLDELDDNGDRQDSDTQGSFSNNNLSKDGEINNDNDTTSNKYIIEDDHRPPAVWVAPLPLMIPISQCKRVSKQGRSLGKECDIKTISKQTSLPGKESIRKIKLSDDNVSKNDNINNDNDTTSNKLIEDDHSLPAVRVEPLPLIIPISQCKRVSKQTSLPGKKRYIKIKGSRAKRLKFSKVWVSNEQAMRWHREELRRAREASLSFVHECDACERLFAEEEELQRHFGDAHSEEAGQYTCDVCLYRFPDQTKLKKHMEAHYINYKCKTCSFESRILTEMQKHVSDTHPNTKCLKCRNKFASKAELDLHFNLCETYKCSYCKVKFPFREMYMEHTQKHLADPDGIYCEVCDVFFSPSRYKEHLRTNMKHVSRDSFKHECEICHNKYPTARGLGQHMVGTHKRPGPHPCDLCQKSFFRKFRLLNHRAAVHKIGPGKVKKKREMDKMCETCGKRFMTAVALSSHRNSHTGERPWRCPDCPAAFTSSSNLWLHRVKIHDKTVNRRENKPNKLCCDECGKQLSSPSKLKYHCDFYHLKKALPFQCTICDKYFRKATRLQKHARVHKRVPCEPCGQWFKDAEALNKHLKKHSLPSWKGPYKCRSCGGTYSNVPEHYKLKHLHLKKVDRVRIKNLFNLDKAVEVIWMDKKFSCDVCGKQFLSPSELKYHYDFYHLKKALPFQCTICDKDAEALDKHLKKHSLPSWKEPDKCRSCGGSYSNLYEHYKLKHLHLKKDDRVRIKNLLNLDKEVEVIWIDKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -