Pxyl012189.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000570.1:3712223-3717098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.7 1.3e+02 4.0 5.5 1 23 139 162 139 162 0.91 2 18 5.5e-05 0.0042 18.1 4.3 1 23 170 192 170 192 0.99 3 18 0.00039 0.03 15.5 1.2 1 23 198 220 198 220 0.97 4 18 0.0012 0.093 13.9 2.1 1 23 235 258 235 258 0.92 5 18 0.26 19 6.6 3.5 2 23 264 286 263 286 0.96 6 18 0.061 4.7 8.5 3.4 1 23 301 323 301 323 0.97 7 18 0.0062 0.47 11.7 2.3 1 23 326 348 326 348 0.95 8 18 0.00029 0.022 15.9 2.8 2 23 419 440 418 440 0.97 9 18 0.0083 0.63 11.3 2.0 2 23 447 469 446 469 0.94 10 18 6.2e-05 0.0047 18.0 3.1 1 23 486 508 486 508 0.99 11 18 0.049 3.7 8.9 4.5 1 23 514 536 514 536 0.98 12 18 2.7 2.1e+02 3.4 1.8 1 23 540 563 540 563 0.96 13 18 0.015 1.2 10.4 3.1 1 21 571 591 571 592 0.94 14 18 0.053 4 8.7 4.6 1 23 709 731 709 732 0.95 15 18 0.00024 0.018 16.1 1.1 1 22 739 760 739 760 0.96 16 18 0.00043 0.032 15.3 5.1 1 23 792 814 792 814 0.98 17 18 9.2 7e+02 1.7 2.1 2 23 820 841 819 841 0.91 18 18 0.00052 0.039 15.1 0.4 1 23 847 870 847 870 0.98
Sequence Information
- Coding Sequence
- ATGGAGAACTCATGGACAGAAAAAATTTGCACTGACTTGGTAAAAGTAGAAATGGATGAAGGTAATATTGGTAGCTTCAAGGATGAACCTGCTGATTATGGAAACAATATGATGACCAATGCCAATAATATTAAAACAGAAAATCATGTCAAACCAGGAGATGATGATGACGATGATGATTCAAAATATGAAGCATACAATTTTCTGGACAATGAAATAGATATAAAGGAAGAACCATTAAATTACACGAATGTACAGCCTGTGACGAGGATTGTTTCGGAACAAAAGAAAAATAAACGCAAACACAAAGGCCCAGGGTCACGCGCAAAGAAGATTAGTTGTCCGATTTGTAACATTCTCCTTCATACCCCTTCCATGAAAGGTCACTTAGAGAAGCACAAGAGTGGGCAAGACTTCCACTGCATACACTGCCCTTACAGAACCACTACTAAGAGTTGCTGGCAAAAGCATCTATTAGAGGCACATAATTTTTGTGTAACACAAGCATACAAATGCACGGAGTGCGACTATTCAACTGATACACGGCAACACCTGACGTCGCATCTCCGCAAACATAGCACCGCTGCGGACCACAAGTGTGCTATCTGCGACTTTGCCACCAAACACCCGGTGGCACTACGCAGGCATATGGCCCAGCATTATTCAATAGAGGACAAACCAATTAAACTGAAAGAGAAGAGATACGAATGTACCGAATGTGACTACGTGACGAAACATCGACACGCGCTGAAGAGCCACGTCGCGGGCAAACACAGCAATGTGACACTCGAGTGTAATTTCTGCGAATATGAAACTAAATACACCACTTCCCTACACAGACATACAAAGATGCAGCATAAAGACGTAATAAATGAAACTTCTGCACAGATACCGAAGAGTTTCAAATGTGAACTGTGCAGTTATCAATCGTTTTTCAAACAAAATCTCATGAGCCATCTGAAAAGACATGTGACACACGCCTGCAATATGTGCAGCTATGAATGCACTGAGCAAAGTGCTCTGTCGAAACATATGGAAGAGCATAGCAAAGTAGATACGTATCAGGGATTGGAATTCATACATGTCCAGAGCATAAAAATGGAAAAACAGGATGAGATCAAACCTGAATTAGACCGTGAAAATGAAACAAAAAATTGTGAGAAAATATTACATTATGTACAAATGGAAAAACAGGATGAGATCAAACCTGAATTAGACTATGAAAATAAAACAAAAAAATCTGAGAAAAAATTACAATGCGAGCATTGTGAGTACTCCACGACTTACAAGAATGCACTCAAAATACATCAACGCAAACACGACACCGTAGAACCAACCAAATGTGATCACTGTGAATACACCACCAAATACCCTACGTCCATGAGACGACATATCGTCATACGGCACTTAAACAAACTACCGAACCCAGACCAAGAAGTGACAGGCCTCACCGACTACAAGTGTGAAGTGTGCGATTACAAAACTTACTTCGAGAACAACTTGAAAAAGCACATGAGAAAGCACAGCGTCGACAAACCGTACAAGTGTGAACTCTGCAGTTATGAAACCGCGTATCAGAGTTGCTTTCGCAAACACGAGAAGTCACACGGTTCGGGGTTCCAGTGCGATAAGTGCGCGTTTAACACGAAACACGAAGGCAGGATGTCGTGGCATTTGCAAAAAATTCACAAACAGAGCATAGACAATGCTCACAAATGCCCCTACTGCGATTTCTCGACGAAAACTAAATTTCGACTGACAATACACAAGCAACGTAGTTTACAGGCTAGCTCCGTTAAATGCTTACATTGCGAGTTTGAGTCTTTGTACAAGTGTGAAATCAGACAACATAAGACCAAGCATTATAACATTACTGGCGCAGCAATAGCAGATCTGACTCCAACCGATACTGATCTTATTGAACTGGAGAAAAACGCAAAAATACCAGAGACAATAATACCTCCAGAACCTACAGAGTTCCTTCAAGTAAATAAGGCTAAGAATAAAGAAACCGACTACCAAAAGCATTTTGAAAATCAAATTCTCGAGCCAACAGACGTTGAAAATCCAGCGGTTGAGTGGAAAAGCATCCCGGTTACTGAGAACCGACACAAAGACAAGCCGTTCTCCTGCAAAAACTGTCCGTACTCGTCAAGATTCAAGGCATCCGTGCAGAGGCATTTCCAACGTCACCATTTAAACCGAGCCAGGCCGTTCCAATGTAAGCATTGTCCCTTCTCAACGTCCACCAAAGACAGCTTAGCACTGCACATTAAGCGGAGCACTCTTAGCTACCCGATGGCATGCCACTGTAAACAAATGACAACGCTATTCAAATGCGAATACTTGACACATCAGAAGTTACACAACGCGTTCAGATGCTCCCTGTGCCCGTACTCTTGCAGGCAAAAGTATGATTTAGAGAAGCATCATTTGATACATACAGGGTCCGGGATGAAATGCCGGTTCTGTGACTATACAGCGGTCAGGAAGCAAAGTCTGTTGTGTCACGAGGCCACACATACGGGTGATAAGCCGTATAAGTGCACAGAATGTGAATACGGGTCAATAAGATTGGTGTCGCTTGAGAACCACATGAAAAGAAGTCATAGTGGTGTTAGTAAAACAACTGAGTTAGGTATTGTTGTTGTATAA
- Protein Sequence
- MENSWTEKICTDLVKVEMDEGNIGSFKDEPADYGNNMMTNANNIKTENHVKPGDDDDDDDSKYEAYNFLDNEIDIKEEPLNYTNVQPVTRIVSEQKKNKRKHKGPGSRAKKISCPICNILLHTPSMKGHLEKHKSGQDFHCIHCPYRTTTKSCWQKHLLEAHNFCVTQAYKCTECDYSTDTRQHLTSHLRKHSTAADHKCAICDFATKHPVALRRHMAQHYSIEDKPIKLKEKRYECTECDYVTKHRHALKSHVAGKHSNVTLECNFCEYETKYTTSLHRHTKMQHKDVINETSAQIPKSFKCELCSYQSFFKQNLMSHLKRHVTHACNMCSYECTEQSALSKHMEEHSKVDTYQGLEFIHVQSIKMEKQDEIKPELDRENETKNCEKILHYVQMEKQDEIKPELDYENKTKKSEKKLQCEHCEYSTTYKNALKIHQRKHDTVEPTKCDHCEYTTKYPTSMRRHIVIRHLNKLPNPDQEVTGLTDYKCEVCDYKTYFENNLKKHMRKHSVDKPYKCELCSYETAYQSCFRKHEKSHGSGFQCDKCAFNTKHEGRMSWHLQKIHKQSIDNAHKCPYCDFSTKTKFRLTIHKQRSLQASSVKCLHCEFESLYKCEIRQHKTKHYNITGAAIADLTPTDTDLIELEKNAKIPETIIPPEPTEFLQVNKAKNKETDYQKHFENQILEPTDVENPAVEWKSIPVTENRHKDKPFSCKNCPYSSRFKASVQRHFQRHHLNRARPFQCKHCPFSTSTKDSLALHIKRSTLSYPMACHCKQMTTLFKCEYLTHQKLHNAFRCSLCPYSCRQKYDLEKHHLIHTGSGMKCRFCDYTAVRKQSLLCHEATHTGDKPYKCTECEYGSIRLVSLENHMKRSHSGVSKTTELGIVVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -