Pxyl006300.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000048.1:4396674-4400861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 91 4.5 1.1 1 23 217 239 217 239 0.95 2 14 0.0012 0.095 13.9 0.1 2 23 264 286 263 286 0.94 3 14 0.68 51 5.3 2.1 2 23 306 328 305 328 0.93 4 14 0.00011 0.0086 17.2 2.6 1 23 330 353 330 353 0.95 5 14 0.005 0.38 12.0 1.3 1 23 362 385 362 385 0.94 6 14 0.00019 0.014 16.5 1.6 2 23 405 427 404 427 0.95 7 14 2.8 2.1e+02 3.3 1.3 2 23 429 451 428 451 0.91 8 14 0.34 26 6.2 0.2 1 23 516 539 516 539 0.88 9 14 0.00011 0.0087 17.1 1.3 2 23 638 660 638 660 0.96 10 14 0.00087 0.066 14.4 1.4 1 23 665 688 665 688 0.96 11 14 0.00034 0.026 15.7 0.5 3 23 695 716 694 716 0.97 12 14 0.003 0.23 12.7 7.3 1 23 720 743 720 743 0.97 13 14 0.0003 0.023 15.8 1.0 2 23 750 771 749 771 0.96 14 14 0.0014 0.1 13.8 8.4 1 23 779 801 779 802 0.95
Sequence Information
- Coding Sequence
- ATGGATTACGCTACAATATGTAGATGCTGCATGTCGCAGCAAAGTACCAAACAATTGAATTTCACTTACAAAAACAGCGACGGAGAGTTTGAAAACTACAGCGATGATTTGTTGGAATGTTTTAACATTTGGGTGACAGAGACAGAGTTGCCAAGCCACATCTGTAACTCGTGCATCCAGAGGCTGCGAGATGCTTTGGACTTTAAGAAAATGGTGCTCAACAGTGATGAGGAGTTCCTGCGATTGATTGAGCAGGGAGTTGTGCCGTGTACAGTACCTAGCCGAGTAACGGACAATTATGATGATGATGATGATGATGATGATAATATGAACGATGAGACAGAATCTATTCATGTGGAAGCGAAACAAAATGATGATGAAAAAAATGTACCTAACATTCTACTAACTACTGTTAAAGTCAAACAAGAAGTCGTACAAGAGACTGCTGATGATTATAACGAAATGACTGACACACGGGATTATTCAACAAATTATGGAAGTGTATTGGAAAATAAGAACACTATTGAAGTTCCAGTGAAATTTGAAAGTCCACCAGCAGGTCTCGCAGTTGCGCCACCGATGGGGCCGAGCCTACACTTCCTGTTCATGTCGACCACCGTCAAGCCATTCCGCTGGTCCTATGGAGTGTTCCAGTGCTTCTACTGCAAGGCCTCCAGCACCGACTACATACGTATCCGGACACATGTGGACACTCACAAATGCTCCACCGAAGAGATCACAACACTCACCAACAGCGGACTACCCATCAAACTGGACATCACTAATATAACTTGCAATGTTTGCCGAAAGCCCTACGAAACACTGGCCGAATTGATCAAACATTTGAACGGGAAGCATAGTTTGGGGTTTGACTATGATGGAGTAACTTTGGAGGAGTACAAAGTGGTTCATTTGAAGTGTCATCTCTGTGTGAACTCGTTTGGAGATTTCAACTCGCTGCACGCCCACGTTCTGCAAACACACAAGTTCACATGTCCCGAGTGCCAGCGAGTGTTTTACAACAAGCAATTCCTGTTTAACCACATGACACAGTTTCACAAAGTCGTTTTCTGCACGCCCTCATTCAAATGCAAGTTGTGCAAAATAAAATTCCAGACTAAAGATCTCTTAGACGCACATTTCGAAAGCCTCCACCTGACTCCGAGCCTCACGGGGTACAAAGTGCTACCAACTAACGATCAAGGATACATGCAATGCCCTGTTTGTCACAATAAATTTTCCTCGGAGAAAAATTTGCAAATCCACATCGACAAGTTTCACGTCCAGTGTAAGTCGTGCTCCCGCTTGTTCGACTGCTCCACGACGCTGGAGCGCCACCTGGCGGAGGCGCACGGCGACGACGACGCGACCGACAGCGAGGACCCCGGCTCCGACGAGATGGAGTTCGCAGAACCAGACTCATCCAAATCTAATCGAAACTCATCAAAAACGGGATCTCGCTCGTTAAGACGCCGACTCAAAGCCAACGTCGCCACTCTGCTCAACATGAGTTCCGCCCTTCCCTTCACGTTTCGTTACACGAAATTCCTCTGCTTCTACTGCAAAGATCCATTCCCAGACCCCGAGTCTTTAGCATCACATACGACGGACAACCACCCGGTGTGGGACGCGGATATTGTCAACTTGTCCGCAGCAAACTTCAGATTGAAGTTAAACGTGTATAACTTGCGTTGTAAAGTCTGCGAGGAACAGCCGGCAGATATAGACAAACTGTTAGCTCACCTTACAAGTCTACACGGAGTTTCATTCGACCCGGAGCTCAGGCCTTGCCTGGTTCCGTTTAGGTTAGCTCCGGGTAAGATGGAATGCGTGCACTGCCCCGGACTCGAGTTTCAGTACTTCAACTTACTGCATCAACACTTCAACTCCATGCACGGGCAAGAGAATGAAGTTTGCGATCATTGTGGCAAGTGCTTCGACACGATCGGTCTGCTCAACGGCCATATATTAACGTATCACACTGAAGGGAAGTACGTGTGTAAAATATGCAGTGAAGATTGTGTGAACTGGCACAAGTTAAGGAATCATTTGGCGATGGTGCACGGAGAGGAGACAGAGGCATGTAAGATTTGCGGAGAGAAATTCCAGACGCTTTATTTAAAGCAGAAGCACATGATGACAGCACACAACTCTGGACACAAGTGTCCTCACTGCGACAGAGTGTTTCACTTGCGTTCATTCATGAACAACCACATACGGAGAACACATTTAAAAGAAAAAAACGTTCCGTGTCATGTTTGCGGTAAAAGATTCTTCAACAAGCTGACTCTGAGCGGGCACATGGTGACGCACGACGCGAGTCTACAAAGGCTGTATCACTGCGAACACTGCGAGAAAGGATTTACGAAGAAGAAGTATTTGCGGCTCCATATTTCGAGACACCATGCGCAGTAG
- Protein Sequence
- MDYATICRCCMSQQSTKQLNFTYKNSDGEFENYSDDLLECFNIWVTETELPSHICNSCIQRLRDALDFKKMVLNSDEEFLRLIEQGVVPCTVPSRVTDNYDDDDDDDDNMNDETESIHVEAKQNDDEKNVPNILLTTVKVKQEVVQETADDYNEMTDTRDYSTNYGSVLENKNTIEVPVKFESPPAGLAVAPPMGPSLHFLFMSTTVKPFRWSYGVFQCFYCKASSTDYIRIRTHVDTHKCSTEEITTLTNSGLPIKLDITNITCNVCRKPYETLAELIKHLNGKHSLGFDYDGVTLEEYKVVHLKCHLCVNSFGDFNSLHAHVLQTHKFTCPECQRVFYNKQFLFNHMTQFHKVVFCTPSFKCKLCKIKFQTKDLLDAHFESLHLTPSLTGYKVLPTNDQGYMQCPVCHNKFSSEKNLQIHIDKFHVQCKSCSRLFDCSTTLERHLAEAHGDDDATDSEDPGSDEMEFAEPDSSKSNRNSSKTGSRSLRRRLKANVATLLNMSSALPFTFRYTKFLCFYCKDPFPDPESLASHTTDNHPVWDADIVNLSAANFRLKLNVYNLRCKVCEEQPADIDKLLAHLTSLHGVSFDPELRPCLVPFRLAPGKMECVHCPGLEFQYFNLLHQHFNSMHGQENEVCDHCGKCFDTIGLLNGHILTYHTEGKYVCKICSEDCVNWHKLRNHLAMVHGEETEACKICGEKFQTLYLKQKHMMTAHNSGHKCPHCDRVFHLRSFMNNHIRRTHLKEKNVPCHVCGKRFFNKLTLSGHMVTHDASLQRLYHCEHCEKGFTKKKYLRLHISRHHAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -