Basic Information

Insect: Plutella xylostella
Gene Symbol: salm
Assembly: GCA_905116875.1
Location: CAJHNJ020000483.1:4424724-4427490[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.022 1.7 9.9 0.3 3 23 30 51 30 51 0.96

2 17 0.0078 0.59 11.4 0.3 2 23 73 94 72 95 0.94

3 17 0.07 5.3 8.4 0.3 1 23 117 139 117 139 0.92

4 17 0.00038 0.029 15.5 0.4 1 23 143 166 143 166 0.95

5 17 0.033 2.5 9.4 0.3 1 20 170 189 170 191 0.93

6 17 0.079 6 8.2 2.7 1 23 228 251 228 251 0.97

7 17 0.00059 0.045 14.9 0.9 2 23 256 278 255 278 0.89

8 17 0.45 34 5.8 3.5 3 23 319 340 319 340 0.95

9 17 0.17 13 7.1 0.0 2 23 362 384 361 384 0.92

10 17 0.7 53 5.2 0.8 1 23 406 428 406 428 0.87

11 17 0.0011 0.082 14.1 0.1 3 23 434 455 433 455 0.96

12 17 0.011 0.8 11.0 0.4 1 22 461 482 461 482 0.94

13 17 3.4 2.6e+02 3.1 5.9 2 22 490 510 489 512 0.88

14 17 1.7 1.3e+02 4.0 3.7 1 23 519 542 519 542 0.93

15 17 0.00014 0.01 16.9 1.6 2 22 547 567 546 569 0.89

16 17 0.0012 0.093 13.9 0.0 1 23 575 597 575 597 0.97

17 17 0.0092 0.7 11.1 0.3 2 23 604 625 603 626 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.022	1.7	9.9	0.3	3	23	30	51	30	51	0.96
2	17	0.0078	0.59	11.4	0.3	2	23	73	94	72	95	0.94
3	17	0.07	5.3	8.4	0.3	1	23	117	139	117	139	0.92
4	17	0.00038	0.029	15.5	0.4	1	23	143	166	143	166	0.95
5	17	0.033	2.5	9.4	0.3	1	20	170	189	170	191	0.93
6	17	0.079	6	8.2	2.7	1	23	228	251	228	251	0.97
7	17	0.00059	0.045	14.9	0.9	2	23	256	278	255	278	0.89
8	17	0.45	34	5.8	3.5	3	23	319	340	319	340	0.95
9	17	0.17	13	7.1	0.0	2	23	362	384	361	384	0.92
10	17	0.7	53	5.2	0.8	1	23	406	428	406	428	0.87
11	17	0.0011	0.082	14.1	0.1	3	23	434	455	433	455	0.96
12	17	0.011	0.8	11.0	0.4	1	22	461	482	461	482	0.94
13	17	3.4	2.6e+02	3.1	5.9	2	22	490	510	489	512	0.88
14	17	1.7	1.3e+02	4.0	3.7	1	23	519	542	519	542	0.93
15	17	0.00014	0.01	16.9	1.6	2	22	547	567	546	569	0.89
16	17	0.0012	0.093	13.9	0.0	1	23	575	597	575	597	0.97
17	17	0.0092	0.7	11.1	0.3	2	23	604	625	603	626	0.94

Sequence Information

Coding Sequence: ATGGCCATACCGAAGGAAAACGCAAAACTTATGTTGAAATACTCAACCGCCTATCCGTTCGTACATAAAGACCGAACATTAATAGGCTGCAGTTTCTGTCCTTCAGCCTTTGAAGACGCCAATTTATTTAGGAAACACATGGATTCGGAGCATCAAATCGACAGATCCACTGTAGTTAACGAAAAGTTTATCACTAGGGTAGATATAATCGATTTGAGATGCAAGGTATGTAAGGAGGAATTCCCCACGCTCGAGCCTTTGGCTCAACATCTTGTGTCTCACCATCATATCAATATAAATCTACAACACGACGTCGGCCTTGCTGCTCTCAAGTTAGAGAACGACAGGTTCTATTGCTATATTTGCGAAAAGGTGTTCCAAGGTTTCTACGGCCTTTTCCTACACGCTGCACTGCATCTTACGAGACACATCTGCGATGTGTGCGGTCGAAATTTCTCAACGCAAAAAGGTCTAGACGGACACGTCCTGACCAATCACAAGGACGTGTTTTCGTGTAATCGTTGCAAGATGTCATTTCCGACTAAGGAGATGAAGCGAGAGCATTTAGCGTTAAACAAGCAATGCTGGCCGCACAGATGTAAACTGTGCAATGATCGATTTAAATGTTCTCAGATGCTGGAGCATCATCGTGTCAATGTTCATGGGAAGACTCGGACGATGTTCCCCTGCAAATCTTGCAATGAGGTCTACCATGACAGAACTCTCTTATATTATCATTTTAAAACGATTCACTCCAAAGATTTGACGTGCCAATACTGCAATAAGGTGTTCAAACTGCGGCGCACACTTGAGCAGCATGTGTATGCGAACCACACAGCGAGACGAAGAGTCATATTGGATGCTCCGATGGCCATCCCGAAGGAAAACGCAAAATTAATATTGAAACACTCCACCGCCTACCCATTCATTCATAGCGAACGGAAATGTATAGGCTGCTGCTTCTGTTCCTCCGCCTTCGAAGACCCCCATTCTTTTAGACAACACATGGACTCAGAACACCAAATAGATAGATCAGTTACAGTTAATGAAAAGTTTATTACTAGAGTAGATATCTTTGAGCTGCGGTGCAATGTATGTACAGCGGAATTCCCGACCCTTGAGCCTCTCGCGGAGCATCTTGTATCTCAACATCAAATAAACATAGACACCCAACATGACCTTGGCCTCGCCGCACTAAAGTTAGAGAAGGACAGATTCTTCTGCTATGTATGCCAAAAGGTGTTCATGGCGTTTTACGGCCTCTTTCTTCACTCCATACTGCACGCCACTAGAAACATTTGCGACGTTTGCGGAAGAAATTTCGCCACCCAAAAAGGGCTAGACGGACACGTCCGGAGTAGTCACACGACGAAGGTAGACTTCCCTTGCAGGGGTTGCAAGCAGACGTTCGAGTCGAAGGAGAAGCGGCGAGAGCACATGGCGACGAGCAAGAAGTGCTTGCCGATCCGGTGCCGGCAGTGCAACGAACGGTTCACGTGCAAGGAGACGCTGGAACACCACCACGTCGAGTCTCACGGGATGCCCCGACGAATGTACGCCTGCAAGTCTTGCGGTGGCGAGTTCCACAACAGAACGCTCCTTCATTACCACTTCAAGGCCAATCACACCACTGACTTGAAATGCCAGTATTGCGAGAAGACGTTCAAAGTTCGCTCCAGTCTTCAGGAGCATGTCTATTTCACGCACACGGGAGAGAGGCCCTATAAGTGTAGTGTCTGTGACAAAGGTGTCGTGAGCTTGCGCGCGTTGGCGAAACATGCGATTGTTCACGATGATACAAAGAAGTTGCCGTGTCCCGTCTGCGGCCGGCTGTTTATAGCTAAATGGAAAGTTAGGGATCATTTGAAACGACATCATCCAGAAATAGCACCATATTAA
Protein Sequence: MAIPKENAKLMLKYSTAYPFVHKDRTLIGCSFCPSAFEDANLFRKHMDSEHQIDRSTVVNEKFITRVDIIDLRCKVCKEEFPTLEPLAQHLVSHHHININLQHDVGLAALKLENDRFYCYICEKVFQGFYGLFLHAALHLTRHICDVCGRNFSTQKGLDGHVLTNHKDVFSCNRCKMSFPTKEMKREHLALNKQCWPHRCKLCNDRFKCSQMLEHHRVNVHGKTRTMFPCKSCNEVYHDRTLLYYHFKTIHSKDLTCQYCNKVFKLRRTLEQHVYANHTARRRVILDAPMAIPKENAKLILKHSTAYPFIHSERKCIGCCFCSSAFEDPHSFRQHMDSEHQIDRSVTVNEKFITRVDIFELRCNVCTAEFPTLEPLAEHLVSQHQINIDTQHDLGLAALKLEKDRFFCYVCQKVFMAFYGLFLHSILHATRNICDVCGRNFATQKGLDGHVRSSHTTKVDFPCRGCKQTFESKEKRREHMATSKKCLPIRCRQCNERFTCKETLEHHHVESHGMPRRMYACKSCGGEFHNRTLLHYHFKANHTTDLKCQYCEKTFKVRSSLQEHVYFTHTGERPYKCSVCDKGVVSLRALAKHAIVHDDTKKLPCPVCGRLFIAKWKVRDHLKRHHPEIAPY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -