Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000569.1:1629552-1637919[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00027 0.02 16.0 1.1 2 23 118 140 117 140 0.94

2 8 0.00065 0.049 14.8 0.2 2 23 209 230 208 230 0.97

3 8 0.02 1.5 10.1 0.2 1 23 239 262 239 262 0.88

4 8 7.3e-05 0.0055 17.8 1.6 1 23 267 289 267 289 0.95

5 8 2.3e-05 0.0017 19.4 2.1 1 23 295 317 295 317 0.98

6 8 0.00018 0.014 16.5 2.4 3 23 325 345 323 345 0.97

7 8 1.7e-07 1.3e-05 26.1 0.1 1 23 351 373 351 373 0.98

8 8 0.0068 0.52 11.6 2.8 1 23 379 401 379 401 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00027	0.02	16.0	1.1	2	23	118	140	117	140	0.94
2	8	0.00065	0.049	14.8	0.2	2	23	209	230	208	230	0.97
3	8	0.02	1.5	10.1	0.2	1	23	239	262	239	262	0.88
4	8	7.3e-05	0.0055	17.8	1.6	1	23	267	289	267	289	0.95
5	8	2.3e-05	0.0017	19.4	2.1	1	23	295	317	295	317	0.98
6	8	0.00018	0.014	16.5	2.4	3	23	325	345	323	345	0.97
7	8	1.7e-07	1.3e-05	26.1	0.1	1	23	351	373	351	373	0.98
8	8	0.0068	0.52	11.6	2.8	1	23	379	401	379	401	0.98

Sequence Information

Coding Sequence: ATGTCGCACCTGGCGTCGCACCAGCGCCGCGCCCCCGAGCCCAGTGCAGAGCAGACAGACACCAAGACCGAAGGAAAAGTAGACACGCCACAACAACTACCAACATTACCAGAAACCAGCGAAACCACATCAGATAACATAGCAGAAAATATAAACTCTACGGCCACAGATAATACTGCTGAGAATGGCTTGGATAATAGTGAATCAACAATAATTAAAATGGAAATAGAGCAGACGAGTGATGCAGTTGTGGAAGTCACTTCTAGTCCTGTTAGTAAACCTGAAGGGCCTAGCATGGAAATTGAACCGGCGGAAGAGGAGAGTGAGCTGGTGAAAGGCAAGAAGAAGCTGAAGTGTAACGTCTGCGACAAAATGTTCAGCAACCGACAGAGCAAGTCCATGCACATGAAGGCAGTGCACGCCGGCGAGCGTCCCTACCAGTGCAGGAGTGCGGGCTGTCGTTCCCCCGCGCCGCCGCCGGCCGCGGGTTCGCATGCGACCTGTGCGGGAAGGTACACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGTGCCGGGAGTGCGGGCTGTCGTTCCCGTACCCGCGCTCGCTGAGCGTGCACGCGCTGCGCCACCGCCGCGCCGCCGCCGGGAAAGGGTTCGCTTGTGATTTGTGCGGGAAGGTCCTAAACCACCCGTCATCCGTAGTCTACCACAAGGAAGCCGAGCACGCGGGCCGGCAGTACGTGTGTATAAACTGCGGGAAAGGATTTAAACACCGCCAGTTACTGCAGAGGCATCAGCTGGTGCACACGCAGATACGGCCGCACACTTGCAAGATATGCGCAGCAACGTTCAAGACGAAGGCGAACCTCATGAACCACCAGCTACGTCACTCGGGCGTGAAGAAGTACGGGTGTGAACTGTGCAAGCAGCGGTTCGCGCACAAGACCTCGCTCACGCTGCACATGAGACTGCACTCAGGCGTAAAGCCCTACGTCTGCGGCGTCTGCGGCAAATCCTTCTCTCAAAAAGGCAACTTGAGCGAGCACGAGCGCATCCACACCGGCAGCAAGCCGTACCAGTGCCGCGAGTGTGCACGCGCCTTCACCACCTCGTCGCAGCATCGCCTGCACGCCAGACGACACCAGGCGCAGCGCCAGGGCAGCCACGCGCTGAAGAGGTTCGCGCCGGCGGCGGTGCAGCGCGCGCACAGGCGGCGCGAGGACGGCGCGCGGCGCCGCGACGAGAAGGCCCCACAGCAGATACGGAACCATAAGCAAGTATCCTTACTAGTCGACAAGCAGCAGCCGCCACCGCTCAAGGTGGAGCCGGAACCGGAAGTGGTCGTGAAGCCGGAAGAAGAAACGATGGCGCCGGAAGCGGAAGCGGAAGACGGTGTCATATACGTCACTTACGACGTGGATGTCGAGAGAGACGCACCGACTTACCATATTTTGGATACTGAGGAGACGGAGCTAATGTCAGACGACAAGGTGGTGTCCAACTGTTCTCTCTACTCGGGCGAGTCTCTGCTACTAGCTGAAGAAGAAGAAGAGCCGACGGCTTACTGTAATGAGGACGCGCATATGGCGGTGACGGACGAGGAGGGCAACCCGCTGCACTTCACGATGCAGGACGGCACGCGCCTCGCCATCACCTCCGCCGACGGGAAGTCATTGCAGGACGGCCAAACGATCCCGGTAGAGATCAACGGCTACAACGAAGATGAGGAGGAAGAAGAAGACTCCGCGGACACGGTGGTGCACCAGCTCAGTCTGCAGAAGGACTCGGACGCCGCGCACTACTTCACCATCGTCTAG
Protein Sequence: MSHLASHQRRAPEPSAEQTDTKTEGKVDTPQQLPTLPETSETTSDNIAENINSTATDNTAENGLDNSESTIIKMEIEQTSDAVVEVTSSPVSKPEGPSMEIEPAEEESELVKGKKKLKCNVCDKMFSNRQSKSMHMKAVHAGERPYQCRSAGCRSPAPPPAAGSHATCAGRYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQCRECGLSFPYPRSLSVHALRHRRAAAGKGFACDLCGKVLNHPSSVVYHKEAEHAGRQYVCINCGKGFKHRQLLQRHQLVHTQIRPHTCKICAATFKTKANLMNHQLRHSGVKKYGCELCKQRFAHKTSLTLHMRLHSGVKPYVCGVCGKSFSQKGNLSEHERIHTGSKPYQCRECARAFTTSSQHRLHARRHQAQRQGSHALKRFAPAAVQRAHRRREDGARRRDEKAPQQIRNHKQVSLLVDKQQPPPLKVEPEPEVVVKPEEETMAPEAEAEDGVIYVTYDVDVERDAPTYHILDTEETELMSDDKVVSNCSLYSGESLLLAEEEEEPTAYCNEDAHMAVTDEEGNPLHFTMQDGTRLAITSADGKSLQDGQTIPVEINGYNEDEEEEEDSADTVVHQLSLQKDSDAAHYFTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -