Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000522.1:4360282-4370736[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00069 0.052 14.7 1.8 1 23 253 275 253 275 0.97

2 12 0.01 0.77 11.0 0.1 1 23 282 305 282 305 0.95

3 12 1.6 1.2e+02 4.1 4.8 1 23 309 331 309 331 0.97

4 12 0.0022 0.16 13.1 2.3 1 23 336 359 336 359 0.97

5 12 0.25 19 6.6 0.7 1 19 363 381 363 381 0.96

6 12 0.47 35 5.8 0.2 2 22 399 419 398 423 0.91

7 12 1.9 1.5e+02 3.8 1.2 1 23 432 454 432 454 0.93

8 12 0.022 1.6 10.0 1.7 2 19 460 477 459 482 0.94

9 12 9.7e-05 0.0074 17.4 0.7 1 23 493 515 493 515 0.98

10 12 2.4e-06 0.00018 22.4 0.6 1 23 521 543 521 543 0.99

11 12 2.1e-05 0.0016 19.4 0.2 1 23 549 571 549 571 0.98

12 12 1.6e-06 0.00012 22.9 0.6 1 23 577 600 577 600 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00069	0.052	14.7	1.8	1	23	253	275	253	275	0.97
2	12	0.01	0.77	11.0	0.1	1	23	282	305	282	305	0.95
3	12	1.6	1.2e+02	4.1	4.8	1	23	309	331	309	331	0.97
4	12	0.0022	0.16	13.1	2.3	1	23	336	359	336	359	0.97
5	12	0.25	19	6.6	0.7	1	19	363	381	363	381	0.96
6	12	0.47	35	5.8	0.2	2	22	399	419	398	423	0.91
7	12	1.9	1.5e+02	3.8	1.2	1	23	432	454	432	454	0.93
8	12	0.022	1.6	10.0	1.7	2	19	460	477	459	482	0.94
9	12	9.7e-05	0.0074	17.4	0.7	1	23	493	515	493	515	0.98
10	12	2.4e-06	0.00018	22.4	0.6	1	23	521	543	521	543	0.99
11	12	2.1e-05	0.0016	19.4	0.2	1	23	549	571	549	571	0.98
12	12	1.6e-06	0.00012	22.9	0.6	1	23	577	600	577	600	0.98

Sequence Information

Coding Sequence: ATGGATTTCGCTTTGAACAATGATATTTATATTGAGAATTTGGATTCCCCTGAAGAGCGCGAGGATTTGTTTGCGTGTCGGGTGTGCCTCGCAACGGATATCAAATTGTTCGATATTCACGAATGTGATTTAGCTGAGAACTTTGAAGCTGTTATGGGGGTTTCAGCCCCGCAGCACGACGGTCTCCCGCAGCACCTGTGCCACTACTGCTTCACGCTGCTGCAGAAGTACCTTGGCTTCCGCGACAAGTACAACCGCTCGCAGACCATCTTGCAGACTGCGGTACTGCTGAGTCAGCCCATAACCACAGAATACCTGCGCATGATCGACCGCGACTCTGAGAACCTGTCCGTCCCGCTGGCGGTGCACTCAGTGGACTTCATCGACTACGAGATCATTGAGGACGAGGAGTTCCAGCCGGAGGCGGAGGGCGAGGAGCAGGATGTCGAGAGGAAGTACTCGGACACTGTCGGGTTTGAGGAGTTCCACGAGGAACAAGAAGCTGAAGACACCACCCTGGACGAGTCGGCGCTCGACCAGGAGTACGTCGTCACCGTGCACGACGACGCGGAGCTGGGGGACGTCATTGAAGTGGCCAACATAAAGCTCGAAAACCCAACCACCGACGACGACACCGTGGGACGCCCCCAGCGCTCTTCCATGCACCCCAACATAGAGGTGATCACATTGACCACCGAGGAGCAGATTGAGGAGATGGAACAGAAGAAGTACAGCCCGAGATACATGTCCGGGCTGCACAAGTGCGATAAGTGTTATAGAGGATTTGTGAACGCCGCTACGTATAGGAGTCATATGATTCAGCATGATCCGGCGAACGGCGCATACGAGTGTGGCGTGTGCGAGAGCAGGTTTAGCAACCTGGCGCGGCTCAAGGTGCACGTGGCCAGCGTGCACGAGAAGCGATACGTGTGCAAACTGTGCCAGCATCGCTCTAGCAACAGCCACCGCGCGCTCGCTCACCAGAAATACCACGAAGGTTTAACCTACGACTGCAAATACTGCGGAGAATCTTTCGCCAAGTCCACGGCCTGCATGCTGCACATCCGGCGCAAGCACGCCGTGTCCTACATGTGCGAGTCGTGCGGCGCCGCCTTCCACTCCACGCACGCGCTGCACGCGCACCCGCCCTGCAACCCCCCCCGCCAACAAAAACCCAAGAACGAGACATGGCTGTACTGCGACGCGTGTCAAGTCGAGTTCCGCGGAGTAGACGCGTTTAACAAGCACATGGAGACTTCTTCAAGGCATTGTGAGGACAACGTGGGACACGATCACACGTGCATACAATGCGGCGACAGCTTCGTCGAGATGCACGAGTTGGACGAGCATCAGCTGACTCACGCACGGGACAGCATCAAGTGTCCGGAGTGCAACAGCTCGTTCCCGAGCCACGCGGCGCTCACCGCGCACTGTCACGCGGCGCACAAGGAGAACTACGACATGAGCAACCCGCGCTTCCCGTGCCGCGAGTGCTCACGCACCTTCACTACGAGCGTGAAGATGTTGGCGCACGCGCGCACGCACGAGACGGAGAAGCCGTACGTGTGCCCCTTCTGCCAGAAGGCCTTCCGCTTCCCGCAGTACCTGCAGATCCACGTGCGCACGCACACGGGCGAGCGTCCCTACGTGTGCAACGTGTGCAACATGGCGTTCCAGGCCAAGGCCAACCTCAACAGGCATCTCAAGGTGCATACCGGCGACAAGCCCTACATGTGCGACCTCTGCGGCAAGTCGTTCACGCAGTCCAACTCGATGAAGGTGCACGTCAAGACGGTGCACCTCAAGATGCCGGACCCGTACCGCAGCCGCCGCAAGTTTTACCGCCGCGCGCGCCCCGACCGCGTCGACGAGTAG
Protein Sequence: MDFALNNDIYIENLDSPEEREDLFACRVCLATDIKLFDIHECDLAENFEAVMGVSAPQHDGLPQHLCHYCFTLLQKYLGFRDKYNRSQTILQTAVLLSQPITTEYLRMIDRDSENLSVPLAVHSVDFIDYEIIEDEEFQPEAEGEEQDVERKYSDTVGFEEFHEEQEAEDTTLDESALDQEYVVTVHDDAELGDVIEVANIKLENPTTDDDTVGRPQRSSMHPNIEVITLTTEEQIEEMEQKKYSPRYMSGLHKCDKCYRGFVNAATYRSHMIQHDPANGAYECGVCESRFSNLARLKVHVASVHEKRYVCKLCQHRSSNSHRALAHQKYHEGLTYDCKYCGESFAKSTACMLHIRRKHAVSYMCESCGAAFHSTHALHAHPPCNPPRQQKPKNETWLYCDACQVEFRGVDAFNKHMETSSRHCEDNVGHDHTCIQCGDSFVEMHELDEHQLTHARDSIKCPECNSSFPSHAALTAHCHAAHKENYDMSNPRFPCRECSRTFTTSVKMLAHARTHETEKPYVCPFCQKAFRFPQYLQIHVRTHTGERPYVCNVCNMAFQAKANLNRHLKVHTGDKPYMCDLCGKSFTQSNSMKVHVKTVHLKMPDPYRSRRKFYRRARPDRVDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -