Pxyl025471.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000522.1:4411995-4429647[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00015 0.011 16.8 2.7 1 23 111 133 111 133 0.99 2 11 0.041 3.2 9.1 1.0 1 23 140 162 140 162 0.96 3 11 0.072 5.5 8.3 0.2 1 23 166 189 166 189 0.97 4 11 0.094 7.1 8.0 4.1 1 23 196 218 196 219 0.95 5 11 2.5e-05 0.0019 19.2 0.2 3 23 226 246 225 246 0.95 6 11 0.00021 0.016 16.3 3.3 1 23 252 274 252 274 0.98 7 11 0.00047 0.036 15.2 1.7 1 21 280 300 280 305 0.93 8 11 0.00077 0.059 14.5 0.8 3 23 315 336 313 336 0.93 9 11 0.00086 0.065 14.4 0.1 1 23 342 364 342 364 0.97 10 11 1.1e-05 0.00084 20.3 0.7 1 23 373 395 373 395 0.97 11 11 0.0011 0.082 14.1 0.2 1 23 401 424 401 424 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAAACTCTGCCTCAAGAACTAGCCGAAATCGGTTTTGAAGGAACTAATGTGAGAAAATTGCAATCAGCATCTAAAAATGCAAGCTCATGTCCCCCATTCCTGGCTGAACTTCCGGCAGGTTCGGATATTGGTAAATTCCGCCAAATCAAAACCGACGAAGACATCGACATAAAACCCACCCTAGAAAACCAAGAAGAAAAGCCGACCATAAGAAAATCAATAGAAATCGACCCGTTGAAGATCAAAATCATTCAACTAAACCCACAAGAGCAGATCAAACAGAGAGAGGAGGAAAGCAAAATGGAGGGTTATTTGAAGTTACCATACAAATGTAGCCTTTGTTTCAAGGGCTTTAACTATGAGAATAAGTTGATGAACCATATGCAGAAACATAGTCCGTCCCGTGGCAAGTTTGAGTGTAAGCTGTGTCACATGTACTTACCTACGCCATACTCCTTCAACGTGCATTCACTGATACATACACGGAGATACGAGTGTCTGAAATGCGGCCGCCGCATGATAGACCGGGCTTCTATCGTCGAGCATTACAGGAGCACACACGACGGCGTAGTCACCACCTACACGTGCCAGCTGTGCGGCAAGGTGTCCGGAAACAACAAGACGCACCGCGGCCACATGCGCAACCACCACTCGGGCGCGCGCCCCGCGTGCCGCGCCTGCGGCAAGACCTTCGTCAACCAGGACTCGCTCAGGGACCACCAGCTAATCCACGAAGGCGTAAAGAACTACTCGTGCCCGCTGTGCCCGCAAAAGTTCAGAACCCGGACTCAAGCGAAGCACCACCAGCTGAAGCACAGCGACGTGAAGGAGTTCTACTGTGTGGAGTGTGATGTGAGATTCAAGTCCGCGCACAATCTACGAATGCATCTGACGAAGAGCCTCAAACACAAGGACTTCACTAGCTTCAAATACGGCTGCTCCCACTGCCCCAAGCGCTTCGAGTCAGAGCCACTACTCCGAAGACACTCGCTGGTGCAACACTGCCAGGTGCGTCCCTACGAGTGCTCCGAGTGCGGTGCGCGGCTCGCGAGCAGAGCGTCTCTGCTGAAGCACTCTCGAGCTCACAGAGCGGCGCCGCAACAACCGAACCATGTCTGCAGCGCTTGTGGGAAGGCTTTTAGGGCTAAGAGCGTCCTCCAGAACCACATCCGCACCCACACCGGAGAGAAGCCGTACCCGTGCCGCGTGTGCGGGCGCCGGTTCGCTCAACGGACGGCCGCTAGCACGCACTTGAAGTTGGTCCATTTGAAGATTAAGAGGGGGGATAAGATAGCACCGAACGCGCTAGCAATAGCGATCAACGACCTCAAACCCCGCGACTACAACCCCGACATGCCGGCCATAGAGGAGGACAAAACCAAGATGGCCGCCAAACAGGAAGTGACGACGGAAGACCCTGTTGCGTATGAAACGTGGCGGCAGCAGAATTGTGATATGTTTTTAAGGCTTGAGTAG
- Protein Sequence
- MEETLPQELAEIGFEGTNVRKLQSASKNASSCPPFLAELPAGSDIGKFRQIKTDEDIDIKPTLENQEEKPTIRKSIEIDPLKIKIIQLNPQEQIKQREEESKMEGYLKLPYKCSLCFKGFNYENKLMNHMQKHSPSRGKFECKLCHMYLPTPYSFNVHSLIHTRRYECLKCGRRMIDRASIVEHYRSTHDGVVTTYTCQLCGKVSGNNKTHRGHMRNHHSGARPACRACGKTFVNQDSLRDHQLIHEGVKNYSCPLCPQKFRTRTQAKHHQLKHSDVKEFYCVECDVRFKSAHNLRMHLTKSLKHKDFTSFKYGCSHCPKRFESEPLLRRHSLVQHCQVRPYECSECGARLASRASLLKHSRAHRAAPQQPNHVCSACGKAFRAKSVLQNHIRTHTGEKPYPCRVCGRRFAQRTAASTHLKLVHLKIKRGDKIAPNALAIAINDLKPRDYNPDMPAIEEDKTKMAAKQEVTTEDPVAYETWRQQNCDMFLRLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -