Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000567.1:1142161-1146485[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.057 4.3 8.7 2.4 3 23 30 50 28 50 0.96

2 14 3e-05 0.0023 18.9 1.8 1 23 88 111 88 111 0.96

3 14 0.00096 0.073 14.2 0.6 1 23 113 136 113 136 0.90

4 14 0.00034 0.026 15.6 0.2 1 23 170 192 170 192 0.96

5 14 0.026 2 9.7 0.3 3 23 220 241 219 241 0.91

6 14 1.4 1.1e+02 4.2 3.4 1 19 247 265 247 269 0.90

7 14 3.9e-05 0.003 18.6 0.1 1 19 275 293 275 295 0.96

8 14 0.1 7.6 7.9 0.9 1 23 307 330 307 330 0.95

9 14 0.0073 0.56 11.5 0.1 3 23 337 359 336 359 0.92

10 14 2.1 1.6e+02 3.7 2.0 3 23 366 386 365 386 0.94

11 14 0.00014 0.011 16.8 0.4 1 23 391 413 391 413 0.97

12 14 2.8e-05 0.0021 19.1 2.6 1 23 419 441 419 441 0.97

13 14 9.6e-06 0.00073 20.5 0.2 1 23 447 469 447 469 0.98

14 14 0.0012 0.093 13.9 2.5 1 23 475 498 475 498 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.057	4.3	8.7	2.4	3	23	30	50	28	50	0.96
2	14	3e-05	0.0023	18.9	1.8	1	23	88	111	88	111	0.96
3	14	0.00096	0.073	14.2	0.6	1	23	113	136	113	136	0.90
4	14	0.00034	0.026	15.6	0.2	1	23	170	192	170	192	0.96
5	14	0.026	2	9.7	0.3	3	23	220	241	219	241	0.91
6	14	1.4	1.1e+02	4.2	3.4	1	19	247	265	247	269	0.90
7	14	3.9e-05	0.003	18.6	0.1	1	19	275	293	275	295	0.96
8	14	0.1	7.6	7.9	0.9	1	23	307	330	307	330	0.95
9	14	0.0073	0.56	11.5	0.1	3	23	337	359	336	359	0.92
10	14	2.1	1.6e+02	3.7	2.0	3	23	366	386	365	386	0.94
11	14	0.00014	0.011	16.8	0.4	1	23	391	413	391	413	0.97
12	14	2.8e-05	0.0021	19.1	2.6	1	23	419	441	419	441	0.97
13	14	9.6e-06	0.00073	20.5	0.2	1	23	447	469	447	469	0.98
14	14	0.0012	0.093	13.9	2.5	1	23	475	498	475	498	0.97

Sequence Information

Coding Sequence: ATGGCCCCGCCGTCCCCAGCACACCCCAAAAACGAAACCCCAAAAAACTTAAAACTCACGACAATCGACATAATTGGAGGCATTTTCTGCAACATCTGTAAGATCACATGTCGCAACAAGAAGGACTATGATGACCACTACGTGACCCACAATGCTGCCAGTAAGGACATAGTGTACACATGTGTGGTCTGCTACAAGGAGATCCCCGGCTACTCCAGCTTCCGCGGGCACTGCTACACCGCGCATGTCATCAAGGACAGATTCAAGTGCAACATTTGCAGCAAAACCTTCTCAAAACAGTCAGTTCTCAATGAACACGAACAGAGCAAGCACCGGTTCAAGTGCCGCCCACCGTGCAACAAGGAATTCTCATCCAAGAAAGAACTGCAACTCCACCAAATTATACACAAAGACAGCGGCCCCCCGTATGCCTGCTACAAGTGTGAAGACACTATCAACTCTGTAGACATCTGTGAGAAGCATGTGGACCAGCACGCAGTCCTCACATACTCCTGCCCGATCTGCAACGAAACATTCTCAGACAAGGCAACAGCGGGCCAACATTTGACCAAACATTTCGCTGGTGAAACACTCCAAGAGTCGTCAATCGAACACAAGCACCGGGACTCGGCCAGCATTGCGCTCGGGGGCATCCTCTGCAACCTGTGCGGGGAAAATTACAATAACAAGTCTGATTTTGATTTACATTACGATGAAGAGCACGGTGAGGAGGTGATCTACTCGTGCAACGTCTGCGGCACCCAATACTCCAAGTACATGGCATATTCCAACCACTGCTACAATCACATCATGAAGGATCAATTCAAATGCGACACATGCAGCCGCTCGTTCAGCCGCCTGTCCCAGCTGATCGCGCACGCGGCGGGCTGCGGGGGCGGGGGGGGCGCGGGCAAGGTGTTCGCCTGCGCCCACTGCAGCAGCTCCTACCAACTCGAGAGCAGCTTGCGAAGCCACTTGAGAGATGTGCATGATGTGAGGACTGTGATGTGCAGCGAGCCGGGATGCGGGGTCGAGTTCTCAACAATGAAGAGCCTAGTCGTGCACCAGCTTTCCCACAAGAACATTGAAAACTACTGTCGCTCGTGCGGGCTGGAGTTCCGCCACCTCGCGGCCTGCGAGAAACATCTCGACGTGCACAAGAAGAAGGAGTTCCCGTGCCCCGTCTGTCGCAAGACCTTTGCCGAGAAGTACCAGGCGACCAGACACATCACGCAGCACTTCCAGAGTGTCTTACATGTGTGCAAGATCTGCGGCAAGATATACAGCCGCAAACACCGACTCGTAGAACACATAAAGATCCACTCAGAGAATAAGCAGTTTAAGTGCGATGTATGCGGCAAAGGATTCGCGCAGATGCTGAACTTGCAACAGCATGTTAATATGCATACGGGGGAGAAGCCGTTCGAGTGTGTCGTGTGCAGCAAAAGATTCGCGAGCCATCCGAACTGGCACAAGCATCTGCGCAACATACACAACATCGACCCGAAGACTGTGTCCAAGCCTCAGGCACAGAAGACCTCTAAACCGCGCAACGTTAAATCTAAACTCGCGAAAGTTGTCGATGAAATAGAAGAAGAAATGCCTCCTGAGGAATACTCAGAGAAGTCTAGCGACTCGTCGGTCGCTGAGTCGAACGCCAATGACATAACGGGTCTAGATGTGTTGGAAGAGGCATATATGCACGTGCACTCAGGCGGCAAGTGGCGAGCCCTGGAGCCAGCAGGGTTTACCGGAGACCTGGCCGGCGGCGACGCGGCCTTCATTGAGGAGCAGGGGGACGCCGCGCTTACACTTACAACGTTGACGCCGCCCGAACCAACGCCTACCCTCGCATCCGAGGCCCCTAGCGACGGCTACCCGCGTGAGTACGGGCCAGACTTCATCAACCACCGCGGCGCCGCTCTCAGCGCTTCCGACTACGCGGGGCAGATCATCGACCTCGACGACCACCTGTTGCCACACATCGACCCCCTACTCACAATCAAAGAGCAAACGCAAAACAACCTACTCGAAAATATGACCAATGTTGATAACGACTACGAAATAAATGATGAAACCCAGTACAACGCCAAGTGGGAACCCCCCATCATCACGAAAATATATCAGAGTTGCAACTACGATGATATACCCAATATCAGCTCGAATATACTGTCGGTGTTGACCACTGATATCTACTAG
Protein Sequence: MAPPSPAHPKNETPKNLKLTTIDIIGGIFCNICKITCRNKKDYDDHYVTHNAASKDIVYTCVVCYKEIPGYSSFRGHCYTAHVIKDRFKCNICSKTFSKQSVLNEHEQSKHRFKCRPPCNKEFSSKKELQLHQIIHKDSGPPYACYKCEDTINSVDICEKHVDQHAVLTYSCPICNETFSDKATAGQHLTKHFAGETLQESSIEHKHRDSASIALGGILCNLCGENYNNKSDFDLHYDEEHGEEVIYSCNVCGTQYSKYMAYSNHCYNHIMKDQFKCDTCSRSFSRLSQLIAHAAGCGGGGGAGKVFACAHCSSSYQLESSLRSHLRDVHDVRTVMCSEPGCGVEFSTMKSLVVHQLSHKNIENYCRSCGLEFRHLAACEKHLDVHKKKEFPCPVCRKTFAEKYQATRHITQHFQSVLHVCKICGKIYSRKHRLVEHIKIHSENKQFKCDVCGKGFAQMLNLQQHVNMHTGEKPFECVVCSKRFASHPNWHKHLRNIHNIDPKTVSKPQAQKTSKPRNVKSKLAKVVDEIEEEMPPEEYSEKSSDSSVAESNANDITGLDVLEEAYMHVHSGGKWRALEPAGFTGDLAGGDAAFIEEQGDAALTLTTLTPPEPTPTLASEAPSDGYPREYGPDFINHRGAALSASDYAGQIIDLDDHLLPHIDPLLTIKEQTQNNLLENMTNVDNDYEINDETQYNAKWEPPIITKIYQSCNYDDIPNISSNILSVLTTDIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -