Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000569.1:4229666-4231009[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.4e-06 0.00041 21.3 0.7 1 23 51 73 51 73 0.98

2 8 2e-05 0.0015 19.5 2.7 1 23 80 102 80 102 0.98

3 8 2.7e-07 2.1e-05 25.4 2.3 1 23 108 130 108 130 0.98

4 8 5.5e-05 0.0042 18.1 1.1 1 23 136 158 136 158 0.99

5 8 9.4e-07 7.1e-05 23.7 2.2 1 23 164 186 164 186 0.97

6 8 8e-05 0.0061 17.6 1.1 1 23 192 216 192 216 0.99

7 8 0.021 1.6 10.0 4.3 1 23 222 244 222 244 0.96

8 8 0.00012 0.0093 17.1 0.6 1 23 250 273 250 273 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.4e-06	0.00041	21.3	0.7	1	23	51	73	51	73	0.98
2	8	2e-05	0.0015	19.5	2.7	1	23	80	102	80	102	0.98
3	8	2.7e-07	2.1e-05	25.4	2.3	1	23	108	130	108	130	0.98
4	8	5.5e-05	0.0042	18.1	1.1	1	23	136	158	136	158	0.99
5	8	9.4e-07	7.1e-05	23.7	2.2	1	23	164	186	164	186	0.97
6	8	8e-05	0.0061	17.6	1.1	1	23	192	216	192	216	0.99
7	8	0.021	1.6	10.0	4.3	1	23	222	244	222	244	0.96
8	8	0.00012	0.0093	17.1	0.6	1	23	250	273	250	273	0.95

Sequence Information

Coding Sequence: ATGACGGGTCGGCGGCCGATACACGTGGAGAGGCCAGTACCGCGGCGCACAAGCGTCGTAACCGCGTTAGGGAGTGTACCCGTGATAATGGATTCTTATTCGGAAATTGAACTCGAGTCTTTTCGTTTGGCAGGTGAGGAGGACCGAACACATCGCTGCAATGAGTGCGGGTTGACGCTGTCCACACGCAGTGCGTTGACCGCCCACGCACGCTCTCATCGAGCTGCTGCTGATGCCCACCGCTGTGACGTGTGCCACAAGACCTTCGCGGTACCAGCTCGTCTCGTACGCCACTACAGAACCCACACTGGAGAACGCCCTTTTGAGTGTGAATACTGTCACAAGATGTTCAGTGTTAAAGAAAATCTTCAAGTACACCGGCGAATCCACACCAAAGAAAGACCGTACCGATGCGGAGTATGTGATGCAGCCTTTGAACATTCCGGAAAACTTCATCGACATGCGCGTATCCATACTGGGGAAAGGCCACATGCCTGTAATATTTGCCACAAAACTTTCATTCAATCTGGACAGCTAGTAATTCATCTTAGGACCCACACTGGTGAAAAACCATATAGATGTCCAGCACCAGGATGTGGCAAAGGATTCACTTGCTCCAAACAATTGAAAGTTCATTCACGCACTCATACTGGAGAGAGACCATACACCTGCGACATATGCCATAGAGATTTTGGATATAATCATGTGCTTAAACTGCACCGCACGCAACATTTTGGAGAACGTTGCTACAGATGTACAGTTTGTGATGGAACATTTAATACCAAAAAGCAAATGGAAGCTCATATATACAATGAACATGGAGAGGATGTACCTCGGAGCCCAGTAGCACAAACGGCAGTCCCACTGGTTGTTAGCAGTAATATGATGTGTGACATTGTTGAGGCAGCCCTTCAACAACTGCCCCCGACGCCGCCGAGTTCGCCTCCTTCTCCTACGTGCCCTGTGGCGGCGTCGGTGACCGCACCGTTGGTGGTTGCCACACCGTCCCCACCGCCTGTATCAAGTTTATTTACTACGTTTGCACCATCATCCCTACCGCCACGGAAGCGCAAGCTCATTCCGCAGCCCGAGCCCGCGCCTGAGCCCACGCCTGTGCGTCACACTTCCGTTATACAATTTGCCCCAGCGGCTGACGCTTCCATGTGTTAG
Protein Sequence: MTGRRPIHVERPVPRRTSVVTALGSVPVIMDSYSEIELESFRLAGEEDRTHRCNECGLTLSTRSALTAHARSHRAAADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVHRRIHTKERPYRCGVCDAAFEHSGKLHRHARIHTGERPHACNICHKTFIQSGQLVIHLRTHTGEKPYRCPAPGCGKGFTCSKQLKVHSRTHTGERPYTCDICHRDFGYNHVLKLHRTQHFGERCYRCTVCDGTFNTKKQMEAHIYNEHGEDVPRSPVAQTAVPLVVSSNMMCDIVEAALQQLPPTPPSSPPSPTCPVAASVTAPLVVATPSPPPVSSLFTTFAPSSLPPRKRKLIPQPEPAPEPTPVRHTSVIQFAPAADASMC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00301462;
90% Identity: -
80% Identity: -