Pxyl022255.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- salm
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000569.1:5175641-5190863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.3 1.8e+02 3.6 3.1 1 21 50 70 50 71 0.94 2 11 6.3e-06 0.00048 21.1 0.9 1 23 368 390 368 390 0.98 3 11 1.3e-05 0.00095 20.2 2.1 1 23 396 418 396 418 0.98 4 11 1.7 1.3e+02 4.0 3.0 5 23 717 735 714 735 0.92 5 11 1.4e-07 1e-05 26.3 1.2 1 23 741 763 741 763 0.97 6 11 6.6e-06 0.0005 21.0 4.4 1 23 773 795 773 795 0.98 7 11 0.0026 0.2 12.8 1.9 2 23 962 983 961 983 0.97 8 11 0.038 2.9 9.2 1.6 1 14 989 1002 989 1003 0.94 9 11 0.99 76 4.7 0.0 10 23 1028 1041 1026 1041 0.93 10 11 5.7e-06 0.00043 21.2 1.7 3 23 1125 1145 1123 1145 0.96 11 11 6.8e-07 5.1e-05 24.2 0.5 1 23 1151 1173 1151 1173 0.98
Sequence Information
- Coding Sequence
- ATGTTCCAATTTGCGACTATTAAATTCGGCATTCATCAGAAAGTGAGCACTAAAACGCGACTCCGGCGTGGTGAAAGTTCGGGATCGTGTTCCGAAGACGAGATCCACAATGCCATATCAGAGGAGAGGGTGGAGCGGCGCGAGGCGCACATGTGCCCGCGCTGCCAGGAGCAGTTCCAGAGCGTGCACGAGTTCCTGCACCACAAGCGCCTCTGCGACCAGAAGGCGCTGCAGATGGGCGAGGAGCGCATGCACTCCGACCCCGAGGAGATGGTGGTCTCCGGCGACGAGGAGATGGACGAGCCCAAGCGCCTGGAGCAGGTGCGCCGCCACCGCCAGGACGCCGAGAACAACAACAGCCTCGAGGACGGCGACGCCGAGCCCGACGCGCCGCCCGTGCCGCTGCCCTTCCCCGTCGCCAGCCACGTCACCCTCGAGGCACTCCAGAATACCAAAGTAGCCGTCGCACAATTCGCCGCCACAGCCATGGCCAATAATGCTGACAATGAGGCGGCCCTACATGAACTAGCAGTGCTACAGAGCACCCTATTCACGCTGCAACACCAACAAGTGTTTCAACTGCAACTAATACGCCAGTTACAAAATCAGCTATCGCTGACTCGAAGAAAGGACGACGAGGAGAGTCCCCCGTGCAGCGAGCAGGAGATGCGCTCGGCGACGCCCGCCGCGCGTTCGCCGTCGCCGCCGCCGCCGCCGCGGGAGCCCACCCCTGCCGCCCCCCCTCCCCCCGCCTCGCAGAACTTGCCCTCGAGCCACGGCCACGGCCGCCACACTCCCAAGTCGGAACCTCTGTCCATTCCTAAGCTTCCGACCTCCTCCCCGCCTATGATGTCCCACCCACCATACAGTTCCATATCTTCGTCGTTAGCCTCCACGATAATTACGAACAATGACCCTCCGCCATCTCTGAATGAACCGAATACACTGGAAATGCTCCAGAAACGAGCCCAAGAAGTACTCGACAACGCATCCCAAGGACTGCTAGCGAATAACCTCGCGGATGAACTGGCATTTAGAAAATCTGGAAAAGTTTCTCCGTACGACGGAAAGAGCGGAGGCCGCAATGAGCCCTTCTTCAAACACCGCTGCAGATACTGCGGGAAAGTGTTCGGAAGCGATTCAGCTCTACAGATCCACATTCGTTCGCACACAGGTGAACGACCATTTAAATGTAATGTTTGTGGTTCCCGATTTACAACCAAAGGAAATCTTAAAGTACATTTCCAAAGACATACTGCAAAATTCCCGCATGTGAAGATGAACCCTAATCCAATACCAGAACATTTGGACAAGTACCACCCTCCGCTACTAGCCCAGCTGTCTCCGGGCCCGATCCCCGGCATGCCGCCCCACCCCCTGCAGTTCAACCCGGGCGCGCCGGGCCCCTTCCCGCCCGGCCTGCCGCTGTACAGGCCGCCGCACCACGACCTGATGCCGCCGCGGCCGCTCGGGGACAAACCCTTGCCTCCGCACCCCTTGTTCTCCATGAGAGAAGAACAGGACGCGCCGGCTGATCTCAGTAAACCGTCGGCACCCAGTCCGTTACGATCTGCGCCCGATATGTTCAAATCGGAGCCACACGACGAAGAAAGCCAACGAGATTCTAGTTTTGAGGACACAGATCGCGTCACGCCCAAGCGAGAACCCGAGGAGAATGACGCCACCCATGAGGCTGAGCAAGAACGGTATCCCTCGACGTCCCCGTACGATGACTGCAGTATGGACTCCAAGTACAGCAACGAAGACCAGATTGGCAGGGAAAGCCCACACGTCAAGCCCGATCCTGACCAACCGGAAAACCTTTCAAGTAAGAACTCATCGATATCTGGAACAATTTCAATAGCAACGGGGCTTCGTACTTATCCTACATTTCCTTTATTTCCTAACTCGCCACCAAGTAGTATATCGTCCGGGTGTCTGACCCCTTTCCATGGTACTCCTCATAGTGGTGTTGATATGGATGTAGTGCGAGACCCTTTGTTCTATAACTCACTTTTGCCTCGACCTGGAAGTAATGATAACTCCTGGGAAAGTCTCATAGAAATAAACAAAACATCTGAAACATCAAAATTGCAACAGTTGGTAGATAATATTGACAGTAAAGTAAACGATCCTAACGAATGCATAGTCTGCCATAGAGTTCTTTCATGCAAAAGTGCTTTACAAATGCACTACAGGACACATACGGGTGAGCGACCGTTCCGATGCAAGCTATGCGGACGGTCATTCACCACCAAAGGCAACTTAAAGACGCATATGGGCGTGCATCGAATAAGACCTCCCACCCAAATGTTACATCAATGCCCAGTCTGTCATAAGAAATATACTGATCCTTCCGCATTACACCAACATATCCGCTCCCACACCGGCGTGGGCCCCAACCTTCCTTTTGACCAACTACGAGGTCCAAACATCCCCGGTTTCCCGACCTTCAACCACGATCTCCCGACAGACGTGCCCTTCCCGAGCCCCTTCCATCCCTTTCGGCCCCCGTCCCCTCCCGGCGACCGACGGGCGGACTCCCGCGCGACTGACGACGAGAGCGGCCGGGACGACCGCGCGCCCGCTGACCGGGAGTTCGACGACGACTCAGAGTCGAAGGATCGTCGAACTTCGCCGCTCTCCGTCTCCGCCTCGGCCTCCGAGTGCGAAGTAAAGACCTTCACCACAACGGCTTCCCTCCCATCGGCGACAGGTTCGGAGCGCGGCACGCCGCCGTCGCCCGCGCAGTCGCCGCTGCACGCGCCGCGCCGCTCGCCGCTGCCGTCGCCGCCCGCGCCGCTGGCCGCCCTGGGCGCGCTCGGCTCCTCGCCCTTCAGCCCGCTCGGACTCGCGTTCCCTCCCGCAGTGCGCGGCAACACCACGTGCAACATCTGCTACAAGACGTTCGCGTGCAACTCGGCGCTGGAGATCCACTACCGCAGCCACACCAAGGAGCGCCCCTTCAAGTGCACCGTCTGCGACCGCGGCTTCTCCACCAAGAGCAGTGGCGGCGGCTGCCGGTGCAAGCGCCCGCGCCCTCGCCCGCCGCACGCCACTGCTTTGGACCTGTGGAACGCCTTCGTCTACCCGGGCAACATGAAGCAGCACATGCTGACGCACAAGATCCGGGACATGCCTCCGACGTTCGACAAGAGCAGCACGGGGCCGCCGAGCGAGGAGAGCACCCGCGACGCCAGCCCCGAGCGCCGCTCCTCCCCGGACAAGCTGGACCTGAAGCGCTCGCCCCCCGCGCACCCGCCGCCGCCCCTCAACCACCCCTCGCCGCTCGACATGCCGCCGATGCCCAAGCGACCCGCTGTACCTAGCGGGCCGCCGCACCAGCCGCCTCTACAATCGTCCAAGCACCTCTGTGGAGTCTGTCGCAAGAACTTCTCCTCATCATCAGCTCTGCAGATCCACATGCGGACGCACACGGGGGACAAGCCCTTCCGCTGCGCCGTTTGCCAGAAGGCTTTCACCACTAAGGGGAATCTGAAGGTGCACATGGGAACGCACATGTGGTCCGGCGGCGCGTCGCGTCGCGGGCGCCGCATGTCGCTGGAGCTGCCGCCGCGGCCGCTGCACGAGCCCCACGACCTGCTGCGCCGCCCCGACCTCTTCTACCCGTACCTGCCCGCGCCCTTCTTGAACGGCATGCAGCAGAAGCTGAACGAGATATCAGTGATCCAGCAGAGCGCGGGACAGAACGGCGTGGGCAAGTTCCCCGGGCTGCTCGGGTTCGGGGCGTTCGGCGGCGCGCGCGGGGGGGCGGCGTCCCCGCTGGAGCGGCCGCCGTCTCTGGAGGGCGGCGACGAGCGCCAGGCCGCCATGCGCGAGCTCGCTGAGCGTGGCCGCGAGCTCGCGGAGCGCACCCGCCAGCTGCGCGACGACGACTACCGCGCTACCCTGCCCCCGCCCGCCGCGCAGCCCTCCCCGCCTGCGCCGCACCTGCCGCACCCCCTCGCCGCCCTGCCGCCGCCCGCGCGCACCGAGGGACTCACCGTGTAG
- Protein Sequence
- MFQFATIKFGIHQKVSTKTRLRRGESSGSCSEDEIHNAISEERVERREAHMCPRCQEQFQSVHEFLHHKRLCDQKALQMGEERMHSDPEEMVVSGDEEMDEPKRLEQVRRHRQDAENNNSLEDGDAEPDAPPVPLPFPVASHVTLEALQNTKVAVAQFAATAMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDEESPPCSEQEMRSATPAARSPSPPPPPREPTPAAPPPPASQNLPSSHGHGRHTPKSEPLSIPKLPTSSPPMMSHPPYSSISSSLASTIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKVSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPIPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFNPGAPGPFPPGLPLYRPPHHDLMPPRPLGDKPLPPHPLFSMREEQDAPADLSKPSAPSPLRSAPDMFKSEPHDEESQRDSSFEDTDRVTPKREPEENDATHEAEQERYPSTSPYDDCSMDSKYSNEDQIGRESPHVKPDPDQPENLSSKNSSISGTISIATGLRTYPTFPLFPNSPPSSISSGCLTPFHGTPHSGVDMDVVRDPLFYNSLLPRPGSNDNSWESLIEINKTSETSKLQQLVDNIDSKVNDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRSFTTKGNLKTHMGVHRIRPPTQMLHQCPVCHKKYTDPSALHQHIRSHTGVGPNLPFDQLRGPNIPGFPTFNHDLPTDVPFPSPFHPFRPPSPPGDRRADSRATDDESGRDDRAPADREFDDDSESKDRRTSPLSVSASASECEVKTFTTTASLPSATGSERGTPPSPAQSPLHAPRRSPLPSPPAPLAALGALGSSPFSPLGLAFPPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCKRPRPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDMPPTFDKSSTGPPSEESTRDASPERRSSPDKLDLKRSPPAHPPPPLNHPSPLDMPPMPKRPAVPSGPPHQPPLQSSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVGKFPGLLGFGAFGGARGGAASPLERPPSLEGGDERQAAMRELAERGRELAERTRQLRDDDYRATLPPPAAQPSPPAPHLPHPLAALPPPARTEGLTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -