Pxyl009825.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000494.1:9602260-9608761[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2e-05 0.004 18.2 6.1 1 23 273 295 273 295 0.99 2 13 0.01 0.76 11.0 1.0 1 23 301 324 301 324 0.96 3 13 0.047 3.6 8.9 1.5 1 23 328 350 328 350 0.98 4 13 1.4e-06 0.00011 23.2 2.1 2 23 356 378 355 378 0.95 5 13 0.015 1.1 10.5 0.0 2 23 386 408 385 408 0.95 6 13 3.2 2.4e+02 3.1 0.1 6 20 423 437 419 439 0.90 7 13 0.0063 0.48 11.7 0.1 3 23 449 470 449 470 0.96 8 13 0.001 0.08 14.1 0.4 3 23 490 511 487 511 0.94 9 13 0.1 7.9 7.8 0.0 2 23 533 555 532 555 0.93 10 13 0.0064 0.49 11.6 3.3 1 23 576 598 576 598 0.98 11 13 1.2e-05 0.00094 20.2 1.3 1 23 604 626 604 626 0.96 12 13 8.1e-05 0.0062 17.6 0.1 2 23 631 653 630 653 0.96 13 13 0.032 2.4 9.4 10.0 1 23 659 682 659 682 0.95
Sequence Information
- Coding Sequence
- ATGGGTTTTGAAAATGTGTGCATAGCTTGCTTGGCTACTGATGTGAAGATGTACAATTTAAATAAATTATTCCATAATGTTTACTTAAATCTGACTGGTATTACGAGCATTGATGATTCAAATAACATCTGTTTTGAATGCACACACATGCTTTTAAAAATGGAACAATTTCGATCTCAATGTCTCAGAGCTAATGAAACTCTCACAAGAACAGAGCATGCACAGGACAGGATCACCTGGCACCATGAACCCAGGCTGAAGCTGACAGAAACAAAAGTTTTGTATTTCGGACCTGATCAAATTGTGTTGTCAGACACTGATGCTGATGATAATGATGTTAAAGAAGCTAAACCATTTCATTCAGGTTTAATACATGCTATAAAATCTGATACTGATGCCCAAGTTCACACTTATGATACAGTTCTGAAGTCAGAAAGGAATAATATACATGTAAATCCATTAAACATACAACAAAATGCTGTCTTTATTGAACCTGCCATTAGCCAATTGAAAGTAGAATTTGAAAGTGATTTCAACCATTCAGAGTTTGTTGATAGATTTGCGTGTGATATCAAAACTCAAGACACAATCAATATTGAAGACAAAATAAAGTTGAAATCGGTCAAGAAAGAGGGTAAATCAAAACCAGCAAGGAAAAGACAAATAAAAGGGTCTCAGAAAAATAATTTGAATAAAGAGACGTTGGATAGAAATAAGCAAATCCGTGAAATTATGACCATTGCTGTACAGAGCCCAGAAGATGCCAAAAAAGAAATTGAAATGAGAAGGCAGTCTCATAAATACGAAACATCTACCTTTAAGTGTAACCTTTGTTTTAAAGTATTCAACCATCAGAGGACACTTAGCAATCATATGAAGAAACATAATAATGATTTCATACATGAATGTGACTATTGTAATATCAAAGCGAAGACCCGAATAATGCTGAAGGAACATATAATACGCACTCACATGTACAAGTTCACATGCAAGAGATGTCCGTATGTGTGTTCCGCAAGAGTTCAAGCAATGTCTCACATCAGGCAACACACAGGAGACATAAGTGTGTGTAAAATATGTGGCAAAACATTTAAACACGCCCACACTCTGGCAATCCATATGCGCGCCAGTCATATCTCGGAGCTGAGTGAGGTCGTGTGTGAAATGTGCGGAGATATATTCATCTCTAAAAATGGGCTGAATGGACACATACGCTTATCGCATTCAGGCGAGAGCTTGCCCCGGTCGGGCCCGGCGTGCGCCCCGTGCGGCGCGCGCTTCTGCAGCGACGCCGCCTACCGGAGGCACCTCGTGCTGTCCACCAAGCACCACGTCAGCAACGGTTGTTCCCGATGCGGCGACACGTTCCCGGATGAGGAGGCGCTGCGGAGGCACGTGCGGGAGGCCCACCCCGAGACCACGCGGAAAGGAAGACTGGCGGATCTGCGCATGCCTGACTGCAATGGCTGTGCCCAATGCGGAGAGACGTTCATAGATGAAGTAGCTCTAAAGAGGCACTTCAGAGAAGTTCACCCCGATTCTAGCCAACAACGCCGAAGCTTATCACATCTAAACATGCCCACTGAGTGGCCCTCGCCTTGCCCTGAGTGTTCCGTGATACTAAACAGTCGCAAGGAATACAGGCAGCACATACTAGCTGTACACCCCACCAGCGCTAGAGCGAGGAGGATACGACACAATGACAAGAAAACGGCTGCGAAAAATCATGTGTGTGAAGTGTGCGGCTTAGGATTTACGGCCGCATGTTACCTCTCCTACCACATGTGCACGCACACGGGTGTCCGGCCTCACGCCTGCGAGCACTGCACACAATCCTTCGCGTCGCCGGCCGAGCTGAAGTTACACCAGAGAGTGCACCAGCCACGGCAGGTGTGCGCTGATTGCGGGAATACTTTCGCTGATGTGTACTCGTTGAGGAAGCATAGACGGGTGGTCCACCTAAAGATCCTCCCACACAACTGCTCCCAGTGTGACAAGAAGTTCCACGACCGCTGCGCGCTGAAGTACCACATGAGACACGTGCACGAGAAGGTGATACGCTTTTATAATAAACTAGCTGTACCCGCGCGCTTCGCTTCGCCTTAA
- Protein Sequence
- MGFENVCIACLATDVKMYNLNKLFHNVYLNLTGITSIDDSNNICFECTHMLLKMEQFRSQCLRANETLTRTEHAQDRITWHHEPRLKLTETKVLYFGPDQIVLSDTDADDNDVKEAKPFHSGLIHAIKSDTDAQVHTYDTVLKSERNNIHVNPLNIQQNAVFIEPAISQLKVEFESDFNHSEFVDRFACDIKTQDTINIEDKIKLKSVKKEGKSKPARKRQIKGSQKNNLNKETLDRNKQIREIMTIAVQSPEDAKKEIEMRRQSHKYETSTFKCNLCFKVFNHQRTLSNHMKKHNNDFIHECDYCNIKAKTRIMLKEHIIRTHMYKFTCKRCPYVCSARVQAMSHIRQHTGDISVCKICGKTFKHAHTLAIHMRASHISELSEVVCEMCGDIFISKNGLNGHIRLSHSGESLPRSGPACAPCGARFCSDAAYRRHLVLSTKHHVSNGCSRCGDTFPDEEALRRHVREAHPETTRKGRLADLRMPDCNGCAQCGETFIDEVALKRHFREVHPDSSQQRRSLSHLNMPTEWPSPCPECSVILNSRKEYRQHILAVHPTSARARRIRHNDKKTAAKNHVCEVCGLGFTAACYLSYHMCTHTGVRPHACEHCTQSFASPAELKLHQRVHQPRQVCADCGNTFADVYSLRKHRRVVHLKILPHNCSQCDKKFHDRCALKYHMRHVHEKVIRFYNKLAVPARFASP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -