Pxyl028510.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000517.1:4164475-4177423[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00036 0.027 15.6 3.4 1 23 225 247 225 247 0.98 2 12 0.00028 0.021 15.9 10.2 1 23 253 275 253 275 0.97 3 12 0.00034 0.026 15.7 6.5 1 23 287 309 287 309 0.96 4 12 0.0023 0.17 13.1 6.9 1 23 315 337 315 337 0.98 5 12 0.00076 0.058 14.6 0.6 1 23 343 365 343 365 0.96 6 12 9.4e-06 0.00072 20.6 0.9 1 23 371 393 371 393 0.97 7 12 2.5e-06 0.00019 22.4 0.1 1 23 399 421 399 421 0.98 8 12 7e-05 0.0053 17.8 0.4 1 23 426 448 426 448 0.96 9 12 0.4 30 6.0 0.2 3 14 456 467 455 468 0.92 10 12 0.00018 0.014 16.5 3.1 1 23 559 581 559 581 0.98 11 12 0.0017 0.13 13.5 3.3 1 23 645 667 645 667 0.96 12 12 3.9e-05 0.003 18.6 4.3 1 23 677 699 677 699 0.97
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACGCCTAGTAATGTGTCGAACTTTGGTTACTCGTGGGGCTTCACCAGCTCCGGAGAGCTCACGAAGAGCGAGGTGGAGACTCCCAGCAGCCTCTCCTACACCCTCGGGAATACGGGCTCACCGGAAACCACACTGACTGTGATGACTCACAAGACACCACAAGTGCAAGAGAAGGTCGGGACCGTTGTAGCTGTCTCCAATAACTCTGCTCAAGTCACTCGTGTGCTGACAACGGGCACTCCCGTTGCTGGTCGCCGAGCCATGTTTGTGCTCAACGAAGCCCCCGCCCACTCCATCAACAGAGTTTCTCAGCAGAATCAGACTGCCACCATACAAACAACAAATCTGTCAGCAAAATCATTCATGACACACCTAGGTCCAATCCAGCTGACTGCCGAGGAATGCAATGAGATACTAGTGAAGCGGGCACTGCAGGCCCAAGGGATTGCCACACCAGTCATAGACGCATCACAACTGAACCACACTCTTCTGAACGGTGGCTTGAAGAGTCTGACCACCGTGCACCAGCACCAGCTGCTGCAGCACACCAAGCAGGAGCCGGGGACCACCAACAATTCACCAAAGGCGGTATATTCGCAGACGGAGATGCTGAGCAACAACGGCATGTCCCAAGCGCCGGTGGCGGCCAAGGAGCGGCCCTACTCGTGCGACGAGTGTGGCAAGTCCTTCCTGCTCAAACACCACCTCACCACGCACGCGAGGGTGCATACAGGGGAGCGACCGCATACGTGCCCGCACTGCGGCAAGTCATTCGCGCACAAACATTGCCTCAACACGCACCTCCTATTGCACAGTACCGCCCGCCCGTACCAGTGGGAGAGGCCGCACGTTTGCGCGCACTGCGGCAAGGCGTTTGCGAGGAAGCACTGTCTGAACACGCATCTGTTGCTTCACTCGGCGGACCGCCCGTACCGCTGTCACGAGTGCAAGATGGCGTTCACGCTGAAGCATCATCTGGTCACGCATTCGAGGGTGCACAGTCGCGACCGTCCGTTCGTGTGCGGCGAGTGCGGGCGCGGGTTCCCGCTGAAGCGCCACCTGGTGACGCACGGCAAGTACCACGCCGGCGAGCGGCCCTACGTGTGCAATGAGTGCGGGGAGAGCTTCGCGCAGAAGGAGCACCTCGTAATGCACAGCCGCTTCCACGGCTCCCTAACTCCCTTCGTCTGCCCCGACTGTGGCGTCTCTTTCGCTCGCAAGTTCCAGCTGGTAAACCACGGTCGAGTGCACGGGAAGGTCCCTCATGCGTGTCCGGTGTGTGGCAAGGAGTTCCTGCAGAAGCGGACACTCGTCGCGCATATGAAAGTCCACACGGGCGACGGCGTGGTAGCCTGTCTGGACTGCGGGGAAGCCTTCAAGTCCAAGTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAAATTGTACAGGTGATCAGCTCAGATGGCCAGCTAATAGGAGAGAAATCGTCGCCGGCCTACAACTGCCACGAGTGTGGTTCATGTTTTAATACTAAGGAAGCGTTATCCCTGCACGTACGCTTGCACGCGGGCGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACCGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCAGCAGCACACGCAGCAGAATCAAGGCATCCAGATAATACAGAGTCCAAACAACGTTGTTCACACGCAAGTTATAGCTACGAATCATCACATAGCAGCGCCTCGGCCGAAGATCCATTTCTGCGTGGACTGCGGGAAAGGATTCGCGGCCAAACACGGACTGTTAGCACATCACAGGAGACACCCGGACGGCAGCTGCACGCTGCGCACGCACGTGTGCGACCAGTGCGGGAAGGCGTTCTTCCAGAAGAACCACCTGATGCTGCACCAGCGGCAGCACATGGACCTGCCCAGCAGAAATGTAACCAACCGGTCGGGCCAAGTGATCGGCAACCAGATCCTGCTGGGCAACATCAACGCGCGCCGCCAGATCATCGGCTCGCAATTGCACATCATCGGCAGAGACGGCAAGACGATTGGTACACAGCTACAGCCGAAGCTGGAGAGACATCACACTACTAGCGGCGACGTGAAGGACGTGGGCGGGCTGGTGCTGTCGGCGGGGCGCTCCAACCTCATCAAGTACGAGATCTCGCTGCCGCCGCCGACCTCCGTGGTGCAGTGCCGAAACGCGACCCTGACGAGCCGATGCTCGTGTGGCTTAGGAAGTGAAGGGACCAACGCTCTGTGGGACGCGGGGCAGCCGAGTGGAACCACTGCGGTGGACACGGAGCCCAGTAGACATCACCTGGGATGCTCTGCAGGAGGCTGA
- Protein Sequence
- MCMPTPSNVSNFGYSWGFTSSGELTKSEVETPSSLSYTLGNTGSPETTLTVMTHKTPQVQEKVGTVVAVSNNSAQVTRVLTTGTPVAGRRAMFVLNEAPAHSINRVSQQNQTATIQTTNLSAKSFMTHLGPIQLTAEECNEILVKRALQAQGIATPVIDASQLNHTLLNGGLKSLTTVHQHQLLQHTKQEPGTTNNSPKAVYSQTEMLSNNGMSQAPVAAKERPYSCDECGKSFLLKHHLTTHARVHTGERPHTCPHCGKSFAHKHCLNTHLLLHSTARPYQWERPHVCAHCGKAFARKHCLNTHLLLHSADRPYRCHECKMAFTLKHHLVTHSRVHSRDRPFVCGECGRGFPLKRHLVTHGKYHAGERPYVCNECGESFAQKEHLVMHSRFHGSLTPFVCPDCGVSFARKFQLVNHGRVHGKVPHACPVCGKEFLQKRTLVAHMKVHTGDGVVACLDCGEAFKSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIVQVISSDGQLIGEKSSPAYNCHECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAQQHTQQNQGIQIIQSPNNVVHTQVIATNHHIAAPRPKIHFCVDCGKGFAAKHGLLAHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPSRNVTNRSGQVIGNQILLGNINARRQIIGSQLHIIGRDGKTIGTQLQPKLERHHTTSGDVKDVGGLVLSAGRSNLIKYEISLPPPTSVVQCRNATLTSRCSCGLGSEGTNALWDAGQPSGTTAVDTEPSRHHLGCSAGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -