Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000159.1:6203260-6217869[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.3e-06 0.00033 21.6 2.8 2 23 47 69 46 69 0.97

2 11 0.00011 0.008 17.2 1.3 1 21 104 124 104 125 0.95

3 11 1.3e-08 1e-06 29.5 0.5 1 23 135 157 135 157 0.98

4 11 7.3e-06 0.00055 20.9 0.6 1 23 192 214 192 214 0.98

5 11 0.15 12 7.3 0.5 1 23 219 241 219 241 0.96

6 11 2.3e-07 1.8e-05 25.6 0.9 1 23 247 269 247 269 0.98

7 11 0.052 3.9 8.8 0.8 1 13 272 284 272 287 0.85

8 11 2.2e-06 0.00017 22.5 0.4 2 23 289 310 288 310 0.97

9 11 1e-05 0.00076 20.5 2.6 1 23 313 335 313 335 0.95

10 11 2.4e-05 0.0018 19.3 3.5 1 23 373 395 373 395 0.98

11 11 5.6 4.3e+02 2.4 0.2 3 23 403 426 402 426 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.3e-06	0.00033	21.6	2.8	2	23	47	69	46	69	0.97
2	11	0.00011	0.008	17.2	1.3	1	21	104	124	104	125	0.95
3	11	1.3e-08	1e-06	29.5	0.5	1	23	135	157	135	157	0.98
4	11	7.3e-06	0.00055	20.9	0.6	1	23	192	214	192	214	0.98
5	11	0.15	12	7.3	0.5	1	23	219	241	219	241	0.96
6	11	2.3e-07	1.8e-05	25.6	0.9	1	23	247	269	247	269	0.98
7	11	0.052	3.9	8.8	0.8	1	13	272	284	272	287	0.85
8	11	2.2e-06	0.00017	22.5	0.4	2	23	289	310	288	310	0.97
9	11	1e-05	0.00076	20.5	2.6	1	23	313	335	313	335	0.95
10	11	2.4e-05	0.0018	19.3	3.5	1	23	373	395	373	395	0.98
11	11	5.6	4.3e+02	2.4	0.2	3	23	403	426	402	426	0.81

Sequence Information

Coding Sequence: ATGCCACCTAAAAAATCTAGAAAAGTTTCCAAAGCTAAATCGCGCAAGAGAACGAAGGTCAAGATGATGAAAACTAAGTCTGAATCCAACAAACTTACTTTAGAGGGTCTGGTCTCCGGTGTTCATGAAAAAAAAATCACATGCAAAGAATGCTCCAAAAAGTTTAAATTTAAAAGTAATTATGAAAAACATGTCCGTACTGAACATTGTAATTTACCGGACTGTGTAAAATGTGACTTATGCCCAGCGCGATGTCCTAACGACAACATTCTTGCCGAACACAAGGCAAATGCTCACGAGAGACCTATGTATGAATGTTCCACATGTTCTAAGATATTCTCGAGGCCGTCCCACGTGTTCAGGCACAGCCGTCTGGGCTGCGGCACCGGTGTGCCTGAACAGTACCCATGTGAAATTTGCAACAAATCATTTAGTAGAAAGGATAATTTACTGGTGCACCTCAGGTCACACATCAAAGTGAACAAGCCATTTCAATGTAAGCACTGCCAGTTTGCTGCTCACACATTCAGACGTTATGTGAATCATGTGCAGAAAGTACATTGGCCCAAATATTTCGAGTGTGACCATTGTGGTAAGTCAACCACATCTCGTCCAGCGCTGATGAAGCATTTAGAAATACATGGAGACAAGAAGTTTGCATGCGAAGTGTGCGGCTACACGTCGCACACGATCGAGGTGATGCGGCGCCACGTGCTGCGCCACACGGACGAGAAGCCGTTCAAGTGCTCGCAGTGCCCGCGCTCCTTCATCCAGTCCGCGCAGCTGCGGAGGCACATGGAGAGCCACCTCAACTTCCTGTGTAAAGAATGCGATAAGACGTTCAGGTCTCACGCCAGGTATTTGAAGTGCGCGCAGTGCCCGCGCTCCTTCATCCAGTCCGCGCAGCTGCGGAGGCACATGGAGAGCCACCTCAACTTCCTGTGTAAAGAGTGCGATAAGACGTTTAGGTCTCACGCCAGGCTCCAGATCCACATGCGCGAGCACAACGGGCTGGCGCCGCTGCTGTGCTCGTTCGAGGACTGCCCCTACTCCAAGCGACAGTTCTCCAGCGAGCAGATCTTCATCGACCACATGAAGGCTCATGAGGACAGAAAATTCCAGTGCACTGTCTGCCATAAGAAATACGCCACCGAGATCAACCTCAAGCGCCACACATCGACCCACGAGTTGGAACGGCCACGCCGCTGCATGTACTGCGTGACGGCGCGCGCCTACATCCGCGGGGACATGCTGGTGCGGCACGTGCGCAGCAAGCACCCCGCCATCTTCAACGAGTACCTGCTGCATGTGCGACAAGTGCTGGGCACAAACGACAACATCGGGCAAGTGCGCCGCTCGGAGCTCGACTCGATCCTCAACTTGCTCGACGCAGTCTCAGACCGGATCCTGGACGAGCACGACGGCTCTAAGGTGCTGTTCGCCGGCATGGAGACCGCCGCCGCGCGCCCCGAGGTGCAGGTGCTGGACATACAGACCGGCGGAGAGGATGATGTGGGTTCGTCGCCTGAGAAGAAGCCGGAGACGACGCAGGGGGGGCACAGCGCGCTGATGTCGGAGGCGCAGCTGTCGGAGAGCGTGCGGCGGCTGCTGGCCGCGCTCATCGACATGCACACGCTCGAGGAGCTGGGCTGGCCCGGCGAGTCCGTCGACGTGTTACTAGAGAAGGTGATCACCCAATGCGACGGCACGCCAGCCGACCGCGGGCGCTGGTCCCGCGTCCAGCGTCTCCGAGAGAACTGCAAGCAGCTGTTCTTACGCGTGGTGGAGGACGCCAGCGTGCGCCGCATGCTCGAGACGCACACCATCGACCAGGTGGTGGCGCACATACTGGACGTCAGCGAGGAGGACCACGACACCGGCATGCTCGTGGACAGCTTGAGCTAG
Protein Sequence: MPPKKSRKVSKAKSRKRTKVKMMKTKSESNKLTLEGLVSGVHEKKITCKECSKKFKFKSNYEKHVRTEHCNLPDCVKCDLCPARCPNDNILAEHKANAHERPMYECSTCSKIFSRPSHVFRHSRLGCGTGVPEQYPCEICNKSFSRKDNLLVHLRSHIKVNKPFQCKHCQFAAHTFRRYVNHVQKVHWPKYFECDHCGKSTTSRPALMKHLEIHGDKKFACEVCGYTSHTIEVMRRHVLRHTDEKPFKCSQCPRSFIQSAQLRRHMESHLNFLCKECDKTFRSHARYLKCAQCPRSFIQSAQLRRHMESHLNFLCKECDKTFRSHARLQIHMREHNGLAPLLCSFEDCPYSKRQFSSEQIFIDHMKAHEDRKFQCTVCHKKYATEINLKRHTSTHELERPRRCMYCVTARAYIRGDMLVRHVRSKHPAIFNEYLLHVRQVLGTNDNIGQVRRSELDSILNLLDAVSDRILDEHDGSKVLFAGMETAAARPEVQVLDIQTGGEDDVGSSPEKKPETTQGGHSALMSEAQLSESVRRLLAALIDMHTLEELGWPGESVDVLLEKVITQCDGTPADRGRWSRVQRLRENCKQLFLRVVEDASVRRMLETHTIDQVVAHILDVSEEDHDTGMLVDSLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -