Pxyl027112.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- Znf296
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000069.1:929526-941866[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00044 0.034 15.3 0.2 2 21 167 186 166 187 0.93 2 14 0.00034 0.026 15.6 1.3 2 23 200 222 199 222 0.93 3 14 0.069 5.3 8.4 0.2 3 23 262 282 260 282 0.96 4 14 4 3e+02 2.8 2.3 1 19 288 306 288 309 0.80 5 14 0.63 48 5.4 1.0 2 23 363 385 362 385 0.91 6 14 0.068 5.2 8.4 2.6 2 20 391 409 390 411 0.92 7 14 0.0012 0.088 14.0 0.3 1 23 419 442 419 442 0.97 8 14 0.00019 0.014 16.5 3.4 1 23 462 484 462 484 0.98 9 14 5.3e-07 4e-05 24.5 2.1 1 23 492 514 492 514 0.99 10 14 3.3e-07 2.5e-05 25.1 2.3 3 23 527 547 525 547 0.96 11 14 3.3e-05 0.0025 18.8 3.2 1 23 553 575 553 575 0.99 12 14 1.4e-06 0.0001 23.2 3.4 2 23 582 603 581 603 0.96 13 14 5.4e-07 4.1e-05 24.5 1.5 1 23 609 631 609 631 0.99 14 14 0.017 1.3 10.3 0.0 1 23 637 659 637 659 0.97
Sequence Information
- Coding Sequence
- ATGGCAGTGAGTTTTGGTTCTAATTTTACACGAGCCGATATCAGATCATTGTGTCGGACATGCCTCTCCAAAGACTGTGGACTACATTCCATTTACGATGTTTCAATCTGGTCGACCAGCCTGGAAGACATTCTCACGACTATTACTGGAATTCGGATCCAGCCAAACGATAACATGCCACAATCTATTTGCGATGTTTGTAAGGAGAAGGCAGAAAATGCTTATGATTTTAAGAGGAAATCGCAGGAATCTGATGCTGCCCTCCAAAACCTTGTTAAGAGTAACGAAGACTCATTTGCATGTGACGTGAAACCCAACCTTAAGATGAAAGTGAAAGAAGAAGCATTAGATGATCCAGAACCCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCAAGGAGTCACGTTTAGACCCAATTAAAAAGGAAGAACCGATGGATACCATATGCAATATTCCTCTGCAGTGCGATATTTGTACGAAGTTTTTTAAATCCGAAAAAGCTTTGAAGGACCACCTGAGTATATGTCTAAGAGTGGAATGCAAGACGGCCGAGGCGTCGTACTGCCCCATCTGCGGCGTCTGCTACACGAGCGCCCGGGTGCTGACGCGGCACATGCACGCCAGCCACGCCGGCCTGGTGGGGCCGAGGCGGCGCGGGCGGCCCAGCAAACCCTCCGTCACTGATTCTATACTGGATGATCTCACCAAAAAAGGTCTGTTTGTAAAAGTACTGAAGCCTTTTGGCTGTCTATTTTGCGATGAAAAGTTCAAATTAAAAGAAGACGTAGCAGCCCATTTAAAAGATCACAAAGATACCAAAGTATTTAAATGCACAGGATGCAAGAGAATGTATTTAAAGTTAACAGATTTCGAAGAACACTCGTGCACTGATGATGATAAGAATGAGGAAACGAAGCCACTCGTTGAATTAATAAAGATGAAGGAATCTACAGGTGACGCGGAGGTGAAGCCGAAAGTACTCGAGGAAGTTCCACTTCACACTCTAGTGAACGCCAAGTGTGCACCTGGAACCCTGCTAATGCCAACTCCGTGCGAGCATTGCCGCGAGGTGCTGTTCTCTGATGACGATCTGCAAGCGCACGTAGACAACTGCCATCCGCACAAGTCCAAGAAGTGTACCATCTGCAATAAGCAATTCTGCTCACTGAAGACGGCGGCTAAACACCGGTTGAACTGCAAGCCCGTGGAGCGGTCCTACTCGTGCCCTACGTGCGGAGATAAATTCGCATACGAGATCACCCTCAACAAACACATATTAAAAACACACAAAGGCCAAAGCATCAAGGTCATGTTCATAGACACCAATACGAAACTGGAACTGAACTACGAGTGTGATACGTGTCAGAGAGTATTCCACAATAAACAGTCGTTGATAAAGCACACGAAATTACACATGCCGCATTTGGAGAAGTCGTATGAGTGCGATGTTTGCCAGAAGAGATTCAGCAGGAAAGATAACATGAAGTCGCACCGCCGAGTACACTCGCCGCGCCGCGTGGTGAAGACCAACACGTGTCTGTGTCTGTACTGCGGCCGCTCGTTCAACAACTCGTCCAACCTGATCGTGCACATGCGCCGCCACACCGGCGAGAAGCCGTACAAGTGTGACTTCTGCGGGAAAGGGTTCCCCAGATCTTCTGACCTGCAGTGCCACCGACGTTCCCACACAGGAGAGAAACCATGCGTGTGCAAAGTTTGCAACAAAGCGTTCTCCCGCAGCAACAAGCTGTCCCGCCACATGCGCATCCACACCGGCGTGAAGCCGTACAAGTGCACTTACTGCGAGAAAGCATTCTCCCAGAGCAACGACTTGACGTTGCACGTGCGACGACACACGGGCGACAAGCCGTATATTTGTGACGTCTGCGGTGATCGCTTCATTCAGGGCACGGCGCTGGCGAGTCACCGCCGCGCTCACGGGCACTTCCCGAACAGTTCCCTAGTCTCAGACCCCGCCCCCGCGCCCGCGCCCTTCGCCCCCGCGCCCGCCGCCACCGCCGACCATCTGCAGATTATCAACGTCACTAGTGACAAGCTCCTGCGATAG
- Protein Sequence
- MAVSFGSNFTRADIRSLCRTCLSKDCGLHSIYDVSIWSTSLEDILTTITGIRIQPNDNMPQSICDVCKEKAENAYDFKRKSQESDAALQNLVKSNEDSFACDVKPNLKMKVKEEALDDPEPAXXXXXXXXXXXXXXXXXXXXXTKESRLDPIKKEEPMDTICNIPLQCDICTKFFKSEKALKDHLSICLRVECKTAEASYCPICGVCYTSARVLTRHMHASHAGLVGPRRRGRPSKPSVTDSILDDLTKKGLFVKVLKPFGCLFCDEKFKLKEDVAAHLKDHKDTKVFKCTGCKRMYLKLTDFEEHSCTDDDKNEETKPLVELIKMKESTGDAEVKPKVLEEVPLHTLVNAKCAPGTLLMPTPCEHCREVLFSDDDLQAHVDNCHPHKSKKCTICNKQFCSLKTAAKHRLNCKPVERSYSCPTCGDKFAYEITLNKHILKTHKGQSIKVMFIDTNTKLELNYECDTCQRVFHNKQSLIKHTKLHMPHLEKSYECDVCQKRFSRKDNMKSHRRVHSPRRVVKTNTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCKVCNKAFSRSNKLSRHMRIHTGVKPYKCTYCEKAFSQSNDLTLHVRRHTGDKPYICDVCGDRFIQGTALASHRRAHGHFPNSSLVSDPAPAPAPFAPAPAATADHLQIINVTSDKLLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -