Pxyl026716.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- -
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000164.1:10763859-10771037[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 7.2e-05 0.0054 17.8 1.2 1 23 161 183 161 183 0.97 2 26 0.014 1.1 10.5 0.1 3 19 222 238 220 241 0.92 3 26 5.1e-05 0.0039 18.3 1.3 3 23 278 299 276 299 0.96 4 26 0.002 0.15 13.2 3.0 2 23 357 379 356 379 0.95 5 26 0.012 0.94 10.7 0.2 1 23 398 420 398 420 0.96 6 26 8.6e-05 0.0065 17.5 2.0 2 23 459 480 458 480 0.96 7 26 5e-05 0.0038 18.3 1.5 2 23 515 537 514 537 0.97 8 26 0.0074 0.56 11.4 0.3 1 23 587 610 587 610 0.97 9 26 0.01 0.8 11.0 0.1 1 23 663 685 663 685 0.97 10 26 0.00051 0.038 15.1 2.6 2 23 697 718 696 718 0.97 11 26 0.47 36 5.8 1.2 3 23 731 751 730 751 0.97 12 26 0.0098 0.74 11.1 0.3 1 23 761 783 761 783 0.98 13 26 0.00061 0.046 14.9 3.5 2 23 813 834 812 834 0.96 14 26 0.00032 0.024 15.7 1.8 1 23 845 867 845 867 0.98 15 26 7.2e-05 0.0055 17.8 0.6 1 23 875 897 875 897 0.98 16 26 0.00028 0.021 15.9 0.2 2 23 917 939 916 939 0.97 17 26 3.6 2.7e+02 3.0 0.4 2 23 958 979 957 979 0.92 18 26 0.0027 0.2 12.8 1.1 2 23 1019 1041 1018 1041 0.95 19 26 0.099 7.5 7.9 0.1 2 23 1064 1085 1063 1085 0.95 20 26 2.2 1.6e+02 3.7 1.6 2 23 1128 1150 1127 1150 0.82 21 26 0.017 1.3 10.3 0.1 2 23 1166 1187 1166 1187 0.93 22 26 0.17 13 7.2 4.8 3 23 1195 1215 1193 1215 0.96 23 26 0.008 0.61 11.3 0.9 2 23 1226 1248 1225 1248 0.95 24 26 0.29 22 6.4 0.4 2 22 1265 1282 1265 1283 0.73 25 26 0.011 0.83 10.9 0.2 2 23 1388 1410 1387 1410 0.94 26 26 2.3 1.7e+02 3.6 2.6 2 20 1448 1466 1447 1468 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTAGGAAAATGCCGACTCTGCCTAAAGCTCGGGGATTTTTACTCCATCTTCACGGTGGACAACTCCGTGCAGCTCGCGGAGATGGTCATGGATTGTGCCAGAGTGAAGGTGTACGAGGGCGACGGCCTCCCTGACAAGGTGTGCTCGGAGTGCATACAGAAGCTGAGCAGCGCATACATCTTCAAACAGCAGTGCGAGCGCTCTGACCAGGAGCTCAGACGCAACTATGTGCCGCCTCCAGGATTCTGTATCACGCCGCCGCCGACCCGACAAAGCAGTGACTCTGCGTTTTCCAACCACACGGACCTGTCCAAGCCGTCCTCATCGACCGAGCACAAGGCGACGCCCGCGCGCGGCCGCAAGCGCAGCCGGGACGACCGCGCGGAATCCGACTACGAGGACCGCAGCGCCTCCCACTTCTCCCCCGAGCCGGAGAGCGACTCCGACTCCCCTCTCCTCAAAAACGAATTCACCTGCGAAATCTGCTCCAAATCCTTCCAGTCGAAGGCCTCCCTCAACTCGCACAAGCAGTGGCACACGCGCAAGACGCCCTCATACCTCACGCCCAACAAGTCGCTCGGCGAGGACAACGTGGTCGACATCCCCAAGAACAACGTGGCCGACTCCGTGGACGACGACGACAAGCTCGCGTGCGACGCCTGCGGCAAGACCTTCAAGCTCAAGATCATGCTGAAGCGGCACGCGGACTCGTGCAGCAAGCAGCAGCAGCCGCCGGCCGACCTGTCGCCCAAGAAGGAGCTGCTCATCTCGCTCGAGCCCATCGTCACGCCTGAGAAAGACAGCGACAAGAAGATCAACTGCGACCTCTGTCCCACCAAGTTCAAGAACGTGGAGAACCTGGAGAAGCACATGCGGGTCTGCCACGCCGCCGTGCTGCCGGAGAAGAAGCGCGAGAGCCTCATTCTGAAGATCTCTAAAAGCGCGAACAAGAAGGAGCCAGTCCCGTGCCTCTACTGCGGCAAGCTGTTCGACGACTACTACGTGCACTCGGCGCACTTCAACACGTGTCCGCAGCGGAGTGACGTCGCGTCGCTCACGTGCCGCCTCTGCAAGAAGACCTTCAGCCGCAAGAACAGTTACTTCCTGCACTTGAAGAACATTCATCTGGAGCCGCGAGTGGTGTCGCAGGCGGATGATGGCAATCAGAAGGGCGAGAGCTTCGAGTGCCGCATGTGCAACAAGAAGATGGCGACGCAGGAGCAGCTGATCCAGCACCTCGCCGCGCACGTGTCCAACATAGACGACGCGGGCTCCGCCGCTGACGAGGAGTCTAGGGCCAGCACGGTGGACGACTCGGCGTCCGTGCACTCGGAGCAGAGCGGCGTCGCCAACGGGCCGCTCAAGTGCAAGCAGTGCGACAAGACCTTCACGTACAGGAAGTCGCTCGCCAACCACGAGATCAAACACACTACCGGGGAACTAGAGATCAAGACGGAACCGCCCGACCCCGCGCCGCCTGCTTACAGAGATACTGACTCAGAAGATGATGACAGTCAAGAGGAAGACCTCACCTGCGATATCTGCGAGAAGATGTTCTCCTACAAGCGCCTGTTAATACAGCACAAGCGCACCAAGCACAACATGAGCTCGGGCTACAAGCGCGCCAACATCAACCTCAAGGACTGCAAGGTCAAGTGCCTCATCTGCGACCTGGAGATGACGGTCAACACGTACAAGGAGCACAACAAAGACCACATCGCGAAGGGCGTCAAGCCGCGCAACCAGTACACCTGCCTCGAGTGCGGAGACACCTTCAAAAACCTCCAAACCCTCGGCACGCATATAAAACTAGTCCACCGGCTGAAGAAACAGATGACTTCCAAAGTGGTGGTGCCGGACTTGGCGGATTTTTGTGAGGTCGTTGTGACTAAGACGGAACCGCTGGACGAGGTCCAGAGTCACAACGGCTCCAGTGAGGTTCCATCCGCCAAGCCCCGCGTCGACCTGACGGGCTTCACGTGCCCCATCTGCAGCAAGAAGATGGGCACGCTGGTCGCGCTCAAGCGCCACGTCAACTGGCACACCAACGTGGGCAACAATATTGAGAAGAAGGTTGAGTGCTTCGTTTGTCAAGAGACGTTCCGCTTCAAGGGGCACTTCAAGCTGCACATGCGCGAACACTACAAGGACCCGCACTTGGACCCCAAGTTCCTGCTCTGCGCCATCTGCGGCCGCCGCAGCAAGCACCTCCGCGCCGCACAGATGCACATGAACTTCCACAAGCAGACCCGCTTCCAGTCACAGGACTACCAGTGCGCCATATGTAAGAGAATCTTCCAGGATAGAAAGGTGTATTTGTCCCACATGGCTATACATTACAAGCGGGGGGATAGCGTCTCGAATACGGTGGTAGGCGATATGATACCAAAGAATAAGCCGCCGGTGAACGCGGAAGGTAACACTACGTGTCCGCATTGCGGGAAGGTGTGCGACTCGGAGGTGTCTCTGAAGCACCACATCTCGTGGCACAACAGCAAGTCTTCTTTATTCGGCGCTCGTCACGAGTGTTCTTTGTGTGGCCTCGTGTTCACGAACAAGCGGCGCATGGAGCTGCACCTGCGCACGCACTACGAGGACGACGACGGGCCCTACAAGTGCCAGGTCTGCGGGAAGGGTTACAATGATGAAGAGTACTTCCGACGACACGTCAAGGGACACAACTTCGACCACCAGAGCCACCAGAAACGCATCGCGAAGCTGAGAGAGAATAAAGTCAAATGTCCGATTTGTAACCGGTATTATCCGGACCTGGTGAAGCTGATCCGGCACCTGCGGCGCACGCACCCGCAGAGCAAGATGGTGAAGGAGGACCCCGACGCGCCGTCGCAGCAGGTGTGGTCCTGCAAGCTCTGCGCCAAGGTGTTCCTGGACGAGCGGCGCCTGCGCATGCACGAGGAGCGCCACCTGCGCAAGCCCGAGTTCTTCAAGTGTCGCTTCTGCGGCAAGAAGAACATCTCGCAGAAGGCGCACAACGTGCACATCAAGGCGCACCTGGTGCGCAAGCACGTGGACGCGCCGCTGCAGTGCTACAAGTGCGAGCGGACCTTCGTGCGCGGCTACGACCTGCACTGGCACCTGCGCGACGAGCACGGCATCACGGAGACCTGGGCGGCGGAGCGCCACCAGCCGCCGCTGGCCGGCCCGCTGCGCCCACTGCAGTGCGCCGTCTGCATGAAGGTGCTCGCCAGCCAGGGCAACTTCGAGCGCCACCTCGACTACCACAACTCCCTCCGCTGCAACTACTGCTTCGACTACTTCACCGCGCTGCGCTTCCTCGAGGGCCACCTCGCCTTCTCGTGCGCCAAGCGGCGGCTGCTGGGCGACACGGAGCCGCACGCGCGCAAGATCAAGTGCCCCGAGTGCTACAAGGCCTTCCACCTGCAGGTGAAGCTGGACTGCCACCTGCGCGCGGCGCACGGGCGGCGCGTGTCCCGCGAGCCGCCCGCGCCGCGCCGCGACGCCGTGTGCGACTACTGCTTCCGCGTGTTCGAGAACGAGGACGCGCTCGCCTCGCACAAGGTGTACCACCGCACCGTCGGCTACTACGGCTGCCGGTACTGCGAGCGCAAGTTCAACACGCTCACGCTGTACCGCAAGCACAAGAACCACCACTTCGCGCAGCTACACGTCGACGAGCCGGTCAAGTGCGAGCACTGCGACCGCACCTTCGTGGCCTTCCGCGAGATGATCTACCACATGCGCGACGACCACGGCGACGACAAGGACTGGGTGGTGCTGCCCAAGGAGTCCATCGAGGAGCAGTGCCCCATCTGCAGCAAGGTGTTCTACAACCTGCCGCGGCACCTGCAGTACCACGAGGAGAACCGCTGCCGCAAGTGCCGCGAGCACTTCTACTCGCGCCTCGACCTGGACCACCACCTGTGCCCCGTGGACTCCGACGACCAGCCCGACGACCAGCCCGGCGACGACGACCGCCCGCGCTACGAGGAGTGCTCCTTCTGCTTCAAGCCCATCACCAAGACCAACTCCAAGCTCAAGCACGACCTCATCCACAAGGGCTCCGGCTCCATCTCGTGCCGCTTCTGCATGCTCAAGTTCAAGACGATGGACGCCTTCAACATCCACGCCTTCTCGCACCGCAGCCGCAAGTACAAGAAGAAGCCGATCAAGTGCCGCCAGTGCGGGGAACAGTTCGTCACCTACGGGCCCTTCATGAAGCACATGGTGTCGGTTCACAAGTCGAAGGCGAAGATGCACTACCGTGCCGTGGTGCGCCCGGAGCGCTGCGTCGTATGCGGCCAAGATTACCCCAACCTGCACAATCACTACAGGGCTCATCTGGCCAATCAGTGCGCTCGCTGCCGCAAGTACTTCACCTCCTCGCGCCTGTTCTCGCAGCACGAGTGCGATAAAGAGGACAGCGATCCGTCGAAGGTGTTCGTTTGCGACGAAAACTTGCAGTTTTTGATCAACACGCACGTGCCTAAAGACATGCAGGACGACGAGAAGTACTATGGCATGGACGACGACGAAGAAGAAGAAGTGGATGTGGAGCAGCCGGAGACGAAGCCGCCGGTCGCCGCCGTCGAGATCCACGACGACGACAGCCAGAACACGCAGCTCAGCGACAACATGGAGCACCTGGTGCCGCTGTCCATCCAGTCGCCGATCATCTCCGACGTGCTGTCGCTGTACCAGGAGAAGCAGGACGCGGCCGTCGTCGTGGACCTCAGCGACGACGACGACGTCAACATGACGGCCGTCACCCACGACACCGTCACCATAGACGACGACGACTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNSVQLAEMVMDCARVKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFCITPPPTRQSSDSAFSNHTDLSKPSSSTEHKATPARGRKRSRDDRAESDYEDRSASHFSPEPESDSDSPLLKNEFTCEICSKSFQSKASLNSHKQWHTRKTPSYLTPNKSLGEDNVVDIPKNNVADSVDDDDKLACDACGKTFKLKIMLKRHADSCSKQQQPPADLSPKKELLISLEPIVTPEKDSDKKINCDLCPTKFKNVENLEKHMRVCHAAVLPEKKRESLILKISKSANKKEPVPCLYCGKLFDDYYVHSAHFNTCPQRSDVASLTCRLCKKTFSRKNSYFLHLKNIHLEPRVVSQADDGNQKGESFECRMCNKKMATQEQLIQHLAAHVSNIDDAGSAADEESRASTVDDSASVHSEQSGVANGPLKCKQCDKTFTYRKSLANHEIKHTTGELEIKTEPPDPAPPAYRDTDSEDDDSQEEDLTCDICEKMFSYKRLLIQHKRTKHNMSSGYKRANINLKDCKVKCLICDLEMTVNTYKEHNKDHIAKGVKPRNQYTCLECGDTFKNLQTLGTHIKLVHRLKKQMTSKVVVPDLADFCEVVVTKTEPLDEVQSHNGSSEVPSAKPRVDLTGFTCPICSKKMGTLVALKRHVNWHTNVGNNIEKKVECFVCQETFRFKGHFKLHMREHYKDPHLDPKFLLCAICGRRSKHLRAAQMHMNFHKQTRFQSQDYQCAICKRIFQDRKVYLSHMAIHYKRGDSVSNTVVGDMIPKNKPPVNAEGNTTCPHCGKVCDSEVSLKHHISWHNSKSSLFGARHECSLCGLVFTNKRRMELHLRTHYEDDDGPYKCQVCGKGYNDEEYFRRHVKGHNFDHQSHQKRIAKLRENKVKCPICNRYYPDLVKLIRHLRRTHPQSKMVKEDPDAPSQQVWSCKLCAKVFLDERRLRMHEERHLRKPEFFKCRFCGKKNISQKAHNVHIKAHLVRKHVDAPLQCYKCERTFVRGYDLHWHLRDEHGITETWAAERHQPPLAGPLRPLQCAVCMKVLASQGNFERHLDYHNSLRCNYCFDYFTALRFLEGHLAFSCAKRRLLGDTEPHARKIKCPECYKAFHLQVKLDCHLRAAHGRRVSREPPAPRRDAVCDYCFRVFENEDALASHKVYHRTVGYYGCRYCERKFNTLTLYRKHKNHHFAQLHVDEPVKCEHCDRTFVAFREMIYHMRDDHGDDKDWVVLPKESIEEQCPICSKVFYNLPRHLQYHEENRCRKCREHFYSRLDLDHHLCPVDSDDQPDDQPGDDDRPRYEECSFCFKPITKTNSKLKHDLIHKGSGSISCRFCMLKFKTMDAFNIHAFSHRSRKYKKKPIKCRQCGEQFVTYGPFMKHMVSVHKSKAKMHYRAVVRPERCVVCGQDYPNLHNHYRAHLANQCARCRKYFTSSRLFSQHECDKEDSDPSKVFVCDENLQFLINTHVPKDMQDDEKYYGMDDDEEEEVDVEQPETKPPVAAVEIHDDDSQNTQLSDNMEHLVPLSIQSPIISDVLSLYQEKQDAAVVVDLSDDDDVNMTAVTHDTVTIDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -