Basic Information

Insect: Plutella xylostella
Gene Symbol: -
Assembly: GCA_905116875.1
Location: CAJHNJ020000048.1:6307202-6310599[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.2 1.6e+02 3.7 3.2 2 23 199 221 198 221 0.95

2 13 0.068 5.2 8.4 0.0 1 23 259 282 259 282 0.96

3 13 0.0029 0.22 12.7 3.2 1 23 296 318 296 318 0.99

4 13 0.00046 0.035 15.2 0.7 1 23 341 363 341 363 0.98

5 13 0.028 2.1 9.6 3.6 1 23 370 393 370 393 0.92

6 13 6.8e-05 0.0052 17.8 0.6 1 23 399 421 399 421 0.95

7 13 3.8e-06 0.00029 21.8 0.9 1 23 427 449 427 449 0.98

8 13 1.6e-07 1.2e-05 26.1 0.7 1 23 455 477 455 477 0.96

9 13 8.5e-06 0.00065 20.7 0.5 1 23 483 505 483 505 0.99

10 13 2e-07 1.5e-05 25.8 0.7 1 23 511 533 511 533 0.98

11 13 0.00015 0.011 16.8 1.6 1 23 539 561 539 561 0.98

12 13 2.7e-05 0.0021 19.1 4.9 1 21 567 587 567 589 0.95

13 13 0.0001 0.0079 17.3 0.1 1 23 595 617 595 617 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.2	1.6e+02	3.7	3.2	2	23	199	221	198	221	0.95
2	13	0.068	5.2	8.4	0.0	1	23	259	282	259	282	0.96
3	13	0.0029	0.22	12.7	3.2	1	23	296	318	296	318	0.99
4	13	0.00046	0.035	15.2	0.7	1	23	341	363	341	363	0.98
5	13	0.028	2.1	9.6	3.6	1	23	370	393	370	393	0.92
6	13	6.8e-05	0.0052	17.8	0.6	1	23	399	421	399	421	0.95
7	13	3.8e-06	0.00029	21.8	0.9	1	23	427	449	427	449	0.98
8	13	1.6e-07	1.2e-05	26.1	0.7	1	23	455	477	455	477	0.96
9	13	8.5e-06	0.00065	20.7	0.5	1	23	483	505	483	505	0.99
10	13	2e-07	1.5e-05	25.8	0.7	1	23	511	533	511	533	0.98
11	13	0.00015	0.011	16.8	1.6	1	23	539	561	539	561	0.98
12	13	2.7e-05	0.0021	19.1	4.9	1	21	567	587	567	589	0.95
13	13	0.0001	0.0079	17.3	0.1	1	23	595	617	595	617	0.98

Sequence Information

Coding Sequence: ATGGATAAAGTGGAAGTTTCTACTGAAAATCTCTGCAGAACTTGCATGGGGAAAGCTGTAGATTTGCGATCACTTACCAGTACTATTATTGGAGATAGAACCCTGAGCGATGTGTTGTGTTTCGTAGCCAACATCATCGTCAAACCAGACGACAAACTTCCCAAACACATATGCGCTGATTGTGAAGCCCAGATGAAGCTGTCTGATACCTTCAAACGCCGTTGCCTGGACGTAGAAAGCCGATTTCACATGCTTATAAATAACTCGGACCAGAATTCTGAAGTTGCTAGCAACCTTATTAAGTCAGAAGACGTGAAATATCCCTACCAGTGTTTCATTAAAGATTTAGACCCTGATGCTAAAGAGGAATTGGAAGAAACTGTAAACAAAAATGAGCAGGATCCTAAAGATGATAATAATGTAAGTAGCGAAGTGATAAGTCAAGATGATGTGAAAGAAGAGATCCTAGACAGTGATAGCATTGACATTGATTATGGCACGTTCCCTAATGATTTTGAAGACTATGAGTCCCTTTCACTAGAAGACCACGAGAAATATATGATTCATTTTAAAGCGGAAGATAAAAGCATTGTCTCCTGTTCACTGTGTAACTTTGTTTGCATTACGAAAGGAGAACATGAAGAGCATTTGCGAAAGAAACATTTCAGAGGAAAACTTGTAAAAAAAGAGCCTAAGACAAAAAAACGAAAAGCCCTTGACAGAAAAAGTAGTCATGAAAACATTGAAAATGAATTAGAAAAGCAGGAAGAGTCTTTTGTTTGTCCTGTCTGTGCCGAGCAAATAATTGGAGCGGATGCGTTCAAGAAACACATGAAACAGTCACACAAGTATACCAAACCAGACTACAAAGAACCAGAAAAACTGTATGAATGCTCACACTGTATGAGAAAATTCGCTAAAAAAGTTACCCTAGCCACACATTTGAAAAGACATGAAAATCAACCACTACCTTCAAATCCATCACTTACTAAATCAGAGTACAAAAACACCGAAAAAAAGTTTGAATGCTCTTACTGTTTGAGAAAATTTGCCAAAAAGGTAACCTTAGCTGCACATGCAAAACGTCATGAAAATCCACCAACATCACATGTGTGCATTATATGCAAAAGAGATTTTAGGCACCGAGCACATCTGGATAACCACATCCTTTCTGTGCACACTACACAAGATGGCTACAAATGTGATTATTGCTTGAAGAGTTTCCCTAACGAAGACAGCTTAAAATTACACAAGGAAGCTCATAATAGCGAGAAGAAGCATAAGTGTCCTATGTGTGAGAAAGCATTTAATATGTTATCAACTTTGCGGGACCACATCCGAGTGCATACGGGAGAGAAGCCATACTTGTGCCCTACGTGTGGCAAGGGCTTCACCCAGAACACAAACTTGCAAGAGCATTTACGGAGACATCAAGGCATCAAGCCTTTTAAATGCGAAATGTGTGAGAGAAGATTCGTATCCAAAGGCGAGCTCTCAGCCCACGCTCGCAAACACAGCGGAGCTCACCCCTTCGTGTGTTCCGATTGTGGCAACGCATTTACAACCTCCAGCTCGCTGGTGAAGCATCGGCGGACGCACACAGGCGAGAGACCGTATGCCTGTGACATGTGCCACATGAAGTTCGCTGCTTCTGGAACCCTCAAAAACCACCGTCGCACGCACACGGGGGAAAAGCCTCACAAATGCACGCACTGCGACAAAGCCTTCGTCCAAAAAAACGACCTGGCAGCCCACATGAGATGCCACACAGGCGAGCGTCCCTACGTGTGCGCAGCCTGCGGCCAGGCCTTCAGACAGGGCTCAGCGCTGAAGACACATCTGAAGATGCACTCCACACAGCCCGGCAGGAAGGACTTACTGATGCTACAGTTGGGACATTCAGGCGGCAGCGTTTAA
Protein Sequence: MDKVEVSTENLCRTCMGKAVDLRSLTSTIIGDRTLSDVLCFVANIIVKPDDKLPKHICADCEAQMKLSDTFKRRCLDVESRFHMLINNSDQNSEVASNLIKSEDVKYPYQCFIKDLDPDAKEELEETVNKNEQDPKDDNNVSSEVISQDDVKEEILDSDSIDIDYGTFPNDFEDYESLSLEDHEKYMIHFKAEDKSIVSCSLCNFVCITKGEHEEHLRKKHFRGKLVKKEPKTKKRKALDRKSSHENIENELEKQEESFVCPVCAEQIIGADAFKKHMKQSHKYTKPDYKEPEKLYECSHCMRKFAKKVTLATHLKRHENQPLPSNPSLTKSEYKNTEKKFECSYCLRKFAKKVTLAAHAKRHENPPTSHVCIICKRDFRHRAHLDNHILSVHTTQDGYKCDYCLKSFPNEDSLKLHKEAHNSEKKHKCPMCEKAFNMLSTLRDHIRVHTGEKPYLCPTCGKGFTQNTNLQEHLRRHQGIKPFKCEMCERRFVSKGELSAHARKHSGAHPFVCSDCGNAFTTSSSLVKHRRTHTGERPYACDMCHMKFAASGTLKNHRRTHTGEKPHKCTHCDKAFVQKNDLAAHMRCHTGERPYVCAACGQAFRQGSALKTHLKMHSTQPGRKDLLMLQLGHSGGSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -