Pxyl008925.1
Basic Information
- Insect
- Plutella xylostella
- Gene Symbol
- ZNF280A
- Assembly
- GCA_905116875.1
- Location
- CAJHNJ020000483.1:4306672-4310590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.55 42 5.6 0.2 1 23 10 32 10 32 0.94 2 19 0.22 17 6.8 0.0 3 22 59 78 57 80 0.88 3 19 0.0015 0.11 13.6 0.9 1 23 129 152 129 152 0.98 4 19 0.0031 0.24 12.6 0.1 3 23 253 274 251 274 0.93 5 19 4.7e-05 0.0036 18.4 0.9 1 23 280 303 280 303 0.94 6 19 0.011 0.86 10.9 1.8 1 23 308 331 308 331 0.97 7 19 0.066 5 8.5 1.7 1 23 336 359 336 359 0.96 8 19 0.0027 0.21 12.8 2.9 2 23 365 385 364 385 0.96 9 19 1.4e-06 0.00011 23.1 1.1 1 23 391 413 391 413 0.98 10 19 0.46 35 5.8 3.4 1 23 459 482 459 482 0.95 11 19 0.0094 0.71 11.1 0.5 2 19 508 525 507 525 0.97 12 19 8.5 6.4e+02 1.8 1.0 3 23 554 575 552 575 0.92 13 19 1.3e-05 0.001 20.1 0.0 3 23 584 605 583 605 0.96 14 19 0.0005 0.038 15.1 2.9 1 23 609 632 609 632 0.95 15 19 5.3e-05 0.004 18.2 1.2 2 23 638 660 637 660 0.93 16 19 5.7e-05 0.0043 18.1 1.3 1 23 667 690 667 690 0.98 17 19 4.4e-06 0.00034 21.6 1.3 2 23 697 718 696 718 0.96 18 19 0.0004 0.031 15.4 3.2 1 23 724 746 724 746 0.98 19 19 4e-06 0.0003 21.7 0.5 1 23 752 774 752 775 0.95
Sequence Information
- Coding Sequence
- ATGCCATTTCGGTGGCTCAAAAGCGCGTACAGATGCTTCTATTGCTACGACATCTTCCAAGAACCAGCGGATCTCAAACTTCATCAAGTAGCTCACGACAACGACGAAATAAAAGTCAAAGCAATGAACAACTATTGGGAGCCAGTGGTTTACGTGGACACGTCAAATTTAGCGTGTAAACTATGCGACGAAAACATCAAAGATCTTTACGACTTGATTGATCATTTAGTAGCTTCGCACGCAGTCGTATACAATAAAGATGTCGGACAAAACGAAGACCCTACGGAGCTACCGTATGACAAACAAGCGGAAAGGGTGCGGGCTAACTTGAGCACCCTGATGTACGCCACAAATGTGACGGCCTTCAAATGGTTCGGAAATAACTACAAGTGTTTCTTTTGCGATTCCACCTTCATCAAAGTGGATGATTTAAAAGACCACACCAGGGTTGATCACGAAGGGTTTTACACTGACAGCATCCTGAAGAGTGCCGTCACAAGAAAGTATCAAATCAAACTCGATATTGCTGGTCTTAAGTGCAAACTGTGCCAGGAAGAACTGGACAATATTAGCACCTGCGTAGAGCACATAGTTAAAAAACACCAGTTGAATTATAATCACGGATTGGACAACCATTTCGTATTTTTTAAACTCAGTGATGGTGATTTAAAATGTATTTACTGTGAGAAGGTTTTCGGTTGCTTCGGGCCTCTGTGCAAGCATGTGCAGGCGGAACATTCTTCAGGAAACATTATATGTGAAACCTGCGGTCGTAACTTCGTATTCATTGCCGGTCTCAAGAAGCACATAGAGAACAAACACAACAAACGGGCGAAATACGAGTGTAAAATATGCGGAAAGAAATTCTACAACTTGAGTAACAAGCGAAACCACGAGGCGGTCAACCACGGCACCTACACCTACAGCTGTGAAACGTGCGGAGATAAATTCTCGAGCATATACAAGTTGAAACTCCATAAGATGAAAACGCACGAGACTGCTTCGTACGAATGCGATCTTTGTCCGATGAAGTTTATCTGGAAGAACCATTACATGAAGCATAGAAACCAGGTTCATTTGAACATCAGGGTCGTGTGTCAAGTTTGCGGAGAACACTTTCACAAGAATTACTTGAAAACGCACATGGTGACACACACGACGGAACGCCCGTTCGAGTGTGGAGTGTGCAAGAAAACATTTGCGAGGAAAAAGACGCTGACTGTGCATGCGCGGACGCATACTAAAAAGGGACATGGATCAAGTCAAGATGACGAGCGAAGCGAAGAGCGAAAGCGGAGAAGAGAAATGGTAAAAAAGATACTTCACCATCTTCTACAATATTCCACAGTTGTGCCGTTCAAATGGAATCATTCCTACATGTGCTTCTACTGCAGCATCAAACTGAACGACTGTCAAACACTCAAAAGTCACACCAAAGAGGAACATGAGGACGCGAAACTAAACAACGTACTAAAGAACTTGCCTCTGAATAGGGCTGTCAAGTTGGATGTCTCAGAAATCAAGTGTAAACTTTGCTTCAAATCTTTTGATTCGCTTGAGGAACTGCTAAAACACTGCTCTGAAGATTACGGCGTTAAATATGATACGGATGTGATTGATTTCCTCGCCCCGTACAGACTTTCCGATGGTGGCATGAACTGTTTACAATGTGACGCAAAGTTCCAATACTTCGGGCCTCTACTCTCACATGTCCACAAAACACATAAAAAGAAAAAACTACGTCGCTTGTGTGAAGTGTGCGGAAAAGGATTTGTTAATCCAAGCAATTTGGAAATTCATGTTTTATCGGCTCATCAAGAGAAGCATTCTTGTGAGCAGTGCGATAAGTCGTTTCAGAGCTACAACGTACTCAAACAACACATGAGGGACACTCATAATAATGACGCCTTGAAATGTGAAAAGTGCGGGCACGGATTCGCGAGCAAATACCTGTTGAAACGACACCTAGCGCTGACCCACGACCTGAAAGAGTTTCAATACAAGTGCGATGTGTGCTCAAAAATATACACGACCATAAGCAAGCTCCGCATACACAAACGGAGGATTCATTTGAATGAAAAGAATGTTTCTTGTCAGATTTGCGGGTTGAGCTTCTTCGACAGTGATCATTTGAAACGGCATATGGTGAAACACACTGACGCGAGGCCGTTTGAGTGTGATTTCTGCAAGAAAACATTTCAGAGGAGGAAAACTTTGGACTTACATCGACGGATACATACGAATGATAAGCGCTATGCGTGCAAGGAGTGCGGCAGGGCGTTCATTCAGGTCACTAGTTTGAAGCTGCATATAAGAGTTCATCATTCGGAGGATAAGCCGTGA
- Protein Sequence
- MPFRWLKSAYRCFYCYDIFQEPADLKLHQVAHDNDEIKVKAMNNYWEPVVYVDTSNLACKLCDENIKDLYDLIDHLVASHAVVYNKDVGQNEDPTELPYDKQAERVRANLSTLMYATNVTAFKWFGNNYKCFFCDSTFIKVDDLKDHTRVDHEGFYTDSILKSAVTRKYQIKLDIAGLKCKLCQEELDNISTCVEHIVKKHQLNYNHGLDNHFVFFKLSDGDLKCIYCEKVFGCFGPLCKHVQAEHSSGNIICETCGRNFVFIAGLKKHIENKHNKRAKYECKICGKKFYNLSNKRNHEAVNHGTYTYSCETCGDKFSSIYKLKLHKMKTHETASYECDLCPMKFIWKNHYMKHRNQVHLNIRVVCQVCGEHFHKNYLKTHMVTHTTERPFECGVCKKTFARKKTLTVHARTHTKKGHGSSQDDERSEERKRRREMVKKILHHLLQYSTVVPFKWNHSYMCFYCSIKLNDCQTLKSHTKEEHEDAKLNNVLKNLPLNRAVKLDVSEIKCKLCFKSFDSLEELLKHCSEDYGVKYDTDVIDFLAPYRLSDGGMNCLQCDAKFQYFGPLLSHVHKTHKKKKLRRLCEVCGKGFVNPSNLEIHVLSAHQEKHSCEQCDKSFQSYNVLKQHMRDTHNNDALKCEKCGHGFASKYLLKRHLALTHDLKEFQYKCDVCSKIYTTISKLRIHKRRIHLNEKNVSCQICGLSFFDSDHLKRHMVKHTDARPFECDFCKKTFQRRKTLDLHRRIHTNDKRYACKECGRAFIQVTSLKLHIRVHHSEDKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -